Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0449 ATGGAGCAAGAAGACAAGCAACCTCAGGATCGAGGAGTGAAGGAGATGCAACAAGGAGATGCACAGGTTCAGCCTCCTCAGCAACCTCAAAAGTGTCCTCGATGCGACTCTCTCAACACAAAATTTTGCTATTACAACAACTATAGCCTGTCACAGCCGCGTTACTTTTGCAAAACATGCCGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTTCCCGTCGGGGGTGGTTGCCGCAAGGGGAAGCGCGCCAAAAGTACTAATTCATCTTCCGCGGCGGAGAATTCCTCTTCCCGGTCGTCGCTGCCGCAGCAACAGCCGCGAGAGGCGGCGGTTCAAACCCAACGACCACCCTTTTCAACGGTGGCGATGGCTAAAGACCCTTCTTCCGTTGTGGCTTCACCTTCTTCAATAGGTCCCTTTTACCATAGTGGTGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAACCCATCATCACACCCTTTTGATCATCAGTCTCTGAATGTTGCGGGTAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTGTCTGGTTTCAATGTTTCATCCCTCGGCTCGCAGCGCCCAATTGGCCCAATTCGTCCACCGCAGTTGTATCAAATGGGGAGTGGTGAAAGGGGGGAGGTGGCTTCTCTGCATTCTCCAGAACAAGGTTTGGTTAATCCATCATCAAGCATGGCTAATAGCAGTAGTGGCGTTTCTCAGCATGATTGGCCTCAGGGCTTCATCAATAATAATGCTGGCAATAGGGCCTCTGACGCGTCTTTGTGGAGCACCATCAGCACCACTATTGGTCGCAACTCTCAGAGGACGAGGACCAGTGCTAGTGCtggttcttcttctttgaaCCAAAATCAATGGCCTGATATTCCGGGGTATGGCCCTCCAACGTGA 924 0.5097 MEQEDKQPQDRGVKEMQQGDAQVQPPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSTNSSSAAENSSSRSSLPQQQPREAAVQTQRPPFSTVAMAKDPSSVVASPSSIGPFYHSGGYLSSLAAMHSLNPSSHPFDHQSLNVAGSDALRSSNLGLLSGFNVSSLGSQRPIGPIRPPQLYQMGSGERGEVASLHSPEQGLVNPSSSMANSSSGVSQHDWPQGFINNNAGNRASDASLWSTISTTIGRNSQRTRTSASAGSSSLNQNQWPDIPGYGPPT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0449 307 MobiDBLite consensus disorder prediction 273 300 - -
Ssu1g0449 307 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Ssu1g0449 307 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 3 306 - -
Ssu1g0449 307 MobiDBLite consensus disorder prediction 226 256 - -
Ssu1g0449 307 MobiDBLite consensus disorder prediction 74 118 - -
Ssu1g0449 307 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Ssu1g0449 307 MobiDBLite consensus disorder prediction 1 32 - -
Ssu1g0449 307 MobiDBLite consensus disorder prediction 214 256 - -
Ssu1g0449 307 MobiDBLite consensus disorder prediction 84 118 - -
Ssu1g0449 307 MobiDBLite consensus disorder prediction 273 307 - -
Ssu1g0449 307 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Ssu1g0449 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 306 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0449 Ssu-Chr1 10336645 10337568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0449 24 92 C2C2-Dof Transcription Factor Family AT5G60200 75.362 1.45e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g0449 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0449 - - gmx:100817065 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0449 1 10336645 10337568 Ssu1g0449 1 10336645 10337568 ECH
Ssu5g1674 5 51101102 51101914 Ssu1g0449 1 10336645 10337568 PCT