Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0398 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGAACCAGAACTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTCCTTCTATGAGGAAACAACAGCAACAAACTCAGCAAACAGAGCCTTTGAAGTGTCCAAGATGTGACTCTATTAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGGGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGGAAGAATAAGCGAGTCAAGAAATCAACCACTCCATCCACAGCCACAGCCACCACTTCTATTAGTACCACCGCCACATCAAATGCCAACATGGATGGTGAGTTGAGTACCCACATCACAATTCCTCCTCTTGCAGTGGATGATCACAAAAGCATACCTTCCTCTCTCTATCAATCTTTGTGCCTGCCACAACAGAATCTGATGAGTACCAAGGACTCAGAAGGCAAAGACTTTGGTATTGGTAATGGCATCTTTCTGAGTTCTACTGTGCCTCAAAACCAAAGCCTTCTCTTCCCATTCACATCATCAAACTCTTTTGACACAAACTCATGTGCAATATCAACCTCTTTGCGATCCTCCAGTGTGTATAACTATAGTGAAGAGTTTAAAATAACGGAGGAGCCAACCATCAACAGTATAATGCCCAGCACTAGTGGCGGCACCAACACACAGCCATGGGAGATAGCTGCAACAAGTTCTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGACATTGATTCGTTGGTCTCAACTCATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCctga 861 0.4425 MGLSSKQVSNRGLDWNQNLLQAQNLELPKPPSMRKQQQQTQQTEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPSTATATTSISTTATSNANMDGELSTHITIPPLAVDDHKSIPSSLYQSLCLPQQNLMSTKDSEGKDFGIGNGIFLSSTVPQNQSLLFPFTSSNSFDTNSCAISTSLRSSSVYNYSEEFKITEEPTINSIMPSTSGGTNTQPWEIAATSSGMEMSNYWSWEDIDSLVSTHLNVPWDDSDIKP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0398 286 MobiDBLite consensus disorder prediction 27 47 - -
Ssu1g0398 286 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Ssu1g0398 286 MobiDBLite consensus disorder prediction 87 124 - -
Ssu1g0398 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 220 IPR045174 GO:0003700|GO:0006355
Ssu1g0398 286 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Ssu1g0398 286 PANTHER OS06G0284500 PROTEIN 31 220 - -
Ssu1g0398 286 MobiDBLite consensus disorder prediction 103 124 - -
Ssu1g0398 286 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0398 Ssu-Chr1 9333498 9334358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0398 33 117 C2C2-Dof Transcription Factor Family AT5G60850 60.920 1.36e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g0398 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0398 - - gmx:778119 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1738 5 52049657 52050589 Ssu1g0398 1 9333498 9334358 PCT