Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g03007 ATGGCAAGAAAATCTTTAGCCCGGTACTTGCTTTTGGGAATGGCTTGTTCCATAGTAATTGCTGCATATGAAGAGAGCTTGTCTCCTAGGACAATTTCTAGTGGCAACTATCATGAGGCAATACAAAGGTTGCAGTCATTTAAGGCCTCTCTAACTACACCTGATTCCTTTGCCTCAGCACCATCTTCCTTGTTATCACCCTTCTCAAGCCCTTCTCCTGCTCCTGCTTCTGCTCCTTCTCCTCACCCACACCAGGGTGTGAACTATTCACGAGTGTACCATGTTACGTCTTATGGTGCAGATCCAACGGGTAGTTCAGATAGCACTGAAGCACTCCTTGCAGTCATAGCAGATGTTGCCACGGGTACTAGTGAAGGATACCTGATGCAAGGCATCAGAAACCTTGGAGGTCCCCAAATTAATCTTGAGGGTGGAAATTACTTGATCAGCCAGCCACTGCGGTTTCCGGTGGCCGGAGTGGGGAACCTTATGATACATGGGGGGAGTATAACAGCCTCAGATGGTTTTCCAGAAGATAGCTATATCATTGATTTGTCACCCCCTTCTTCTAATGGAGGAAACACAAATAGTTCTTCACTATCCTACAATTTTGAGTACATAACTCTTAAGGACCTCTTGTTGGACTCAAACTTCAGGGGAGGTGGCATTTCAGTCATAAACTCACTTAGGATTAACATAGACAATTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAGGTGGCCATGAAACCTACATCAGGAACACTTTCCTTGGTCAGCATATAACTGCTGGTGGGGACAAAAATGAAAGAGACTTCTCAGGCACAGGAATAAACCTCCAGGGTAATGACAATGCTGTCACAGATGTTGTAATTTACTCTGCTGCCATAGGAATAATGGTTACTGGTCAAGCCAATGCGTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGTTTTGGAGGCACAGGGATTTATTTGAAACTACCCGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACTAATATCGTGGCCGAAGACCCGGTTCAATTCCATGTCTCTAGTTCTTTCTTCCTTGGTGATGGCAACATTGTCCTAAAGTCTAAGAATGGGGTTATAAATGGTATTGATATTGTTGATAACATGTTCTCGGGTTCAAATAATGGGGTTGAAATTGTTCAGCTGGATCAATCCAATAGTCCTTTCCATCAAATTGAACAAGTTACTGTTGACAGAAACAATGTAAGAGGGATGAAGTTGAAGGCCACAGTTGCAAAAAGGTCCATGCAAGGGAATGGAACCTCATGGACTGTTGATTTTAGCAATGATCTGCTTTTTCCTAACCTTATAAAGAATGTGCAGTACTCTTTAAGCACCACTGGCAGTACCTTCCCCAATCATGTTCTGAGGAATGTGTCTGAGAATCGTGTTGTGATTGAAACAAATGAAGCAGTGTCTGCCAGTGTCTTTGTTACGGTGGATCAAAGAGGCGTAGTTGAAAAGGTTAATGATTTTGAAGGGTCTAACATTGAATCTGAAGCTTTTGGTAGCAATATACATGGTGAACAAAGTCTTTGGCAGAAGCAGAGAAGGTGTAGAGGTTTGAAGGTTGAAACCGAAAATGACTAA 1650 0.4261 MARKSLARYLLLGMACSIVIAAYEESLSPRTISSGNYHEAIQRLQSFKASLTTPDSFASAPSSLLSPFSSPSPAPASAPSPHPHQGVNYSRVYHVTSYGADPTGSSDSTEALLAVIADVATGTSEGYLMQGIRNLGGPQINLEGGNYLISQPLRFPVAGVGNLMIHGGSITASDGFPEDSYIIDLSPPSSNGGNTNSSSLSYNFEYITLKDLLLDSNFRGGGISVINSLRINIDNCYITHFTTNGILVQGGHETYIRNTFLGQHITAGGDKNERDFSGTGINLQGNDNAVTDVVIYSAAIGIMVTGQANAFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTNIVAEDPVQFHVSSSFFLGDGNIVLKSKNGVINGIDIVDNMFSGSNNGVEIVQLDQSNSPFHQIEQVTVDRNNVRGMKLKATVAKRSMQGNGTSWTVDFSNDLLFPNLIKNVQYSLSTTGSTFPNHVLRNVSENRVVIETNEAVSASVFVTVDQRGVVEKVNDFEGSNIESEAFGSNIHGEQSLWQKQRRCRGLKVETEND 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g03007 549 SMART pbh1 285 306 IPR006626 -
Spst9g03007 549 SMART pbh1 228 250 IPR006626 -
Spst9g03007 549 SMART pbh1 375 401 IPR006626 -
Spst9g03007 549 Gene3D - 92 514 IPR012334 -
Spst9g03007 549 MobiDBLite consensus disorder prediction 62 85 - -
Spst9g03007 549 FunFam Polygalacturonase QRT3 95 497 - -
Spst9g03007 549 SUPERFAMILY Pectin lyase-like 88 457 IPR011050 -
Spst9g03007 549 PANTHER POLYGALACTURONASE QRT3 21 502 IPR039279 GO:0004650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g03007 Spst-Chr9 64152277 64155215 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g03007 9 64152277 64155215 Spst9g03007 9 64152277 64155215 ECH