Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02507 ATGGCATCTCAAGCAGAACTTAGCATGGATTACAAGCCCTACAGCTATTCCACACTGCTGAAATCCTTTGCAGACCAAACTGATCAGACCTACAAGCTCGAAGAATTTCTCTCTCGCTTAGAGGAGGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACAAACGCTGTGGAAGCTTCAAGGCAGCAACTACAGGCCTTCAGGTCAAACCAAGGCACAAGGCCAGTTCTTGAAGAATTCATACCCATAAAGCATCCAAGTTCTCAAGAAAACACTGACAAGGCATCAAACATATCAGACAAGGCGAATTGGATGATATCAGCTCAATTATGGAGCCAAGCAAGCGAAGGAACCAAACCAAAATCCGCAATCACATCATCAAAAGAAGGTGCTGATACAGGGTTTAGCGTGAGCCCTAAGCTAACCCTAGACAACATACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTCATGCCAAGGATTAAGGGGTCTTCCTGAGTTAGCCCTTGCCTCTTCTGAGAATGAAATGGAGGAGAAGAAATGTGAAGAGGCAGAAAAATGTTCCCAAAGGGAGAATTCAGTCAAAGGAGGGAGTTGTGAGGGGATTGTTGATCAGGGGAAAAGTGCTGCAGTTGCAACTGCACAAACAACATGTAATACAACCAACACTACTGGACAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCAGACTTGCACAGTCGATTTGTTAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCACCCCAAGCCTACAACCAGGAGCACAACCACCACAGCTTGTATTCCTTGGAGGATTTTGGGTGCCACCGGAATATGCCCCGGCTGCTGCACACTCCGGTAGTCCAACGCTCTTCAGCCCACATGCTACCTCACATGTGCCACCGCCACACTACTGTGCAGCCACCCCAGTGTCCCAAGATTTCTATAACTCAAATCCATCACTATCATTGCCGCCACCACACGGCCACACTCTTCATCACCACCATTTTCACATGTACAAGACAGCACCACTGACCCAAAGCTCTCCAGAATCAGATGTTCGAAGCGGTGGTGGCGACCGATCTGAGAGCATTGAGGATGGGAAGTCGGAGAGCGGCAGCTGGAAAGGAGAGAGTGGAGAGAAGAAAGGGTTGGCAGCACTAAGAGACCAAGAAGGGGAAGAGAGCACTGGGAGTGAGATCACTCTTAAATTCTAG 1362 0.478 MASQAELSMDYKPYSYSTLLKSFADQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFIPIKHPSSQENTDKASNISDKANWMISAQLWSQASEGTKPKSAITSSKEGADTGFSVSPKLTLDNIHRNGGAFLPFSKERNSCQGLRGLPELALASSENEMEEKKCEEAEKCSQRENSVKGGSCEGIVDQGKSAAVATAQTTCNTTNTTGQTHRKARRCWSPDLHSRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPSLQPGAQPPQLVFLGGFWVPPEYAPAAAHSGSPTLFSPHATSHVPPPHYCAATPVSQDFYNSNPSLSLPPPHGHTLHHHHFHMYKTAPLTQSSPESDVRSGGGDRSESIEDGKSESGSWKGESGEKKGLAALRDQEGEESTGSEITLKF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02507 453 MobiDBLite consensus disorder prediction 392 453 - -
Spst9g02507 453 Gene3D - 242 300 - -
Spst9g02507 453 MobiDBLite consensus disorder prediction 404 447 - -
Spst9g02507 453 NCBIfam myb-like DNA-binding domain, SHAQKYF class 243 298 IPR006447 GO:0003677
Spst9g02507 453 Coils Coil 33 53 - -
Spst9g02507 453 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Spst9g02507 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 300 IPR017930 -
Spst9g02507 453 Pfam Myb-like DNA-binding domain 245 296 IPR001005 -
Spst9g02507 453 FunFam Myb family transcription factor 242 300 - -
Spst9g02507 453 SUPERFAMILY Homeodomain-like 240 301 IPR009057 -
Spst9g02507 453 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02507 Spst-Chr9 58882820 58885258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02507 1 453 G2-like Transcription Factor Family AT2G03500 49.380 9.50e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst9g02507 Myb_DNA-binding 1.8e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02507 9 58882820 58885258 Spst9g02507 9 58882820 58885258 ECH
Spst3g04863 3 100398122 100400476 Spst9g02507 9 58882820 58885258 PCT