Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02441 ATGCAACCTCAAACTTCAGATACGTTTCCCTCTCACTCTGGCAGTGACCCAATTTCCTGTTATGACCCAGCATTTTACTACAGCAGGCCCTTTTGCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAAACAACCCTGACCTTCCTCCTTCGTCCTTTTTTCACTTTTCTTCTCCTTCCTTTGAAGATACTCAAATTTTCCTCGAACAACACCATGATTTCCTCCTTCAGTTTCACCATCAACCTCTGCCTCATGAGCCCGAGCCTCAACCAGTTAATATTTCCATGGAGGCTTCTTCTAAAAAGAGTGATCAGATCCCGAGAAAAAGACCCGGCAAGAGAGATAGGCACAGCAAGATCAACACCGCAAGAGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCCAAGAGGTTTTTCGGCTTGCAAGATATGCTAGGCTTTGACAAAGCTAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAAGTTGAAATCCAGCGTCTAGCGAAAGAGAAAAAGAAGCAGAAGAAGAATGGTCACCACAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTCTAGTGAGTGGAGATCAAGAACAAGAAGGAGAAGAGAGAGTAGACAAAGTTCTGAAGAGAAGGGTCAAGCATTCTAGGAAGATCAGTGCATTCCATCCTCTTGCAAAGGAGTGCAGGGAAAGGGCAAGAGAAAGGGCACGCGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGCTTAGCTGAAGAATCAAAAGAATGTGGAGAGGAAAGAAATCAAAATCTGATCCAATTGAGTTCTTGGAACCCCTCTGAAGCTGGAGAAGAATCTGGTACCAAGAGCCATACTGTGCATCCTTCCTTGGACGTGATAACTGATGAGGTTAAGGAACATAGCTACCACACAAAGGAGCATGGCGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATCTTCGATAACTATGGATTCTCTCAAGAAGTAAGTCTCCAATTGGGGTTTCGTAGATAA 1068 0.4438 MQPQTSDTFPSHSGSDPISCYDPAFYYSRPFCIDSESNPTSKQENNPDLPPSSFFHFSSPSFEDTQIFLEQHHDFLLQFHHQPLPHEPEPQPVNISMEASSKKSDQIPRKRPGKRDRHSKINTARGLRDRRMRLSLDVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIQRLAKEKKKQKKNGHHSCSSASSECEEGVSSLDEVLVSGDQEQEGEERVDKVLKRRVKHSRKISAFHPLAKECRERARERARERTREKMRSRGLAEESKECGEERNQNLIQLSSWNPSEAGEESGTKSHTVHPSLDVITDEVKEHSYHTKEHGDDSLVILSKWSPSLIFDNYGFSQEVSLQLGFRR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02441 355 MobiDBLite consensus disorder prediction 82 127 - -
Spst9g02441 355 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Spst9g02441 355 Coils Coil 162 182 - -
Spst9g02441 355 MobiDBLite consensus disorder prediction 245 299 - -
Spst9g02441 355 Pfam TCP family transcription factor 113 260 IPR017887 -
Spst9g02441 355 MobiDBLite consensus disorder prediction 274 299 - -
Spst9g02441 355 MobiDBLite consensus disorder prediction 245 273 - -
Spst9g02441 355 ProSiteProfiles R domain profile. 240 257 IPR017888 -
Spst9g02441 355 MobiDBLite consensus disorder prediction 175 194 - -
Spst9g02441 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 86 284 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02441 Spst-Chr9 57690725 57691792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02441 39 254 TCP Transcription Factor Family AT3G18550 39.516 2.31e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst9g02441 TCP 1.1e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02441 9 57690725 57691792 Spst9g02441 9 57690725 57691792 ECH
Spst9g02441 9 57690725 57691792 Spst3g04843 3 100163429 100164941 ECH
Spst9g02441 9 57690725 57691792 Spst1g01535 1 19168775 19169967 ECH