Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02364 ATGCTCGAAAGTAAGGACCCCGCAATTAGGCTCTTTGGCCAGAAGATTCCCTTTCCCGGAGAACCCGACGCTCCGCCCATTGTCGCCTCCGAAACCGTCTCTCCGCCGCCGATGGATGTTGACGAAGACTTAGAAGACGTCGCTGAGTCAGAGACTGAGGATGATGAGAACAAAGACAAGGATCCTCCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTTCTCCAAATGCTGCAGACTCTAATAAGAAGAACCCAGAGGGTACTCAGAACCCAAACACACCTTCCAAAGACGAAGAATCTGCAAAGTCAAAAACCAACAAGTCAGAAAACGATCAAACGGATCCAACCACAAAAGTTGCTGCTGTTACAACCAACTCAGAAAACGACAACAATAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCATGTCCTCGCTGCAATAGCATGGACACCAAGTTTTGTTACTACAACAACTACAACGTGAACCAGCCACGTTACTTCTGCAAAGCATGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGGGACTCATCTTTTGAAGCCCAATGGGAGAGTCCTCAGCTTTGGGTTAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTCAACCTCACGGAGAAGAAAACAAGAAACGGGTTTCACACCATCGAGGATCAAAGAAACAAAGATGATGACTGCTCAAGTGCATCTTCCATTACCGTTTCCAATGAGGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCAAACAACAACGGTTTCATAAATCATCATCACCATGTTCCGTGCATTTCCACTGTTCCTTGGGCTTATCCTTGGACCTCCGGTGTTCCCTCAGCTCCTGCTTTGTGCCCTCCAGGGTTTCCCATGTCATTCTACCCTCACGCATTTTGGAACATTCCTTGGTTTCCCGCACACTCACAGCACCATGCTGCTCCATCTCAAAGGTCTCCGGGTTCTGGTCCAAATTCTCCTACTCTTGGGAAACACTCCAGGGACGATGACGTGGCGAAGCAAGAGCATTTGCATGAGGAACCATCGAGGCAGAGAAACGGGTCTGTGTTGGTGCCCAAAACTTTGAGAATCGATGACCCCAGTGAGGCTGCCAAGAGTTCTATATGGGCAACGTTAGGGATCAAGAACGAGTGCGTGAGTGGGGGTGGCATGTTCAAGGGGTTCCAATCCAAGAAAGACGAGAAGGACCATGTCGTTGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1434 0.4854 MLESKDPAIRLFGQKIPFPGEPDAPPIVASETVSPPPMDVDEDLEDVAESETEDDENKDKDPPEEVSEKTKEADPSPNAADSNKKNPEGTQNPNTPSKDEESAKSKTNKSENDQTDPTTKVAAVTTNSENDNNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHLLKPNGRVLSFGLDPPICDSMASVLNLTEKKTRNGFHTIEDQRNKDDDCSSASSITVSNEESGKSTSQESLVPNNNGFINHHHHVPCISTVPWAYPWTSGVPSAPALCPPGFPMSFYPHAFWNIPWFPAHSQHHAAPSQRSPGSGPNSPTLGKHSRDDDVAKQEHLHEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKDEKDHVVETSPVLRANPAALSRSLNFHENS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02364 477 PANTHER CYCLIC DOF FACTOR 2 4 477 IPR045174 GO:0003700|GO:0006355
Spst9g02364 477 MobiDBLite consensus disorder prediction 360 377 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 358 408 - -
Spst9g02364 477 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Spst9g02364 477 MobiDBLite consensus disorder prediction 378 398 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 262 301 - -
Spst9g02364 477 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Spst9g02364 477 MobiDBLite consensus disorder prediction 124 143 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 38 61 - -
Spst9g02364 477 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Spst9g02364 477 MobiDBLite consensus disorder prediction 99 113 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 76 98 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 275 301 - -
Spst9g02364 477 MobiDBLite consensus disorder prediction 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02364 Spst-Chr9 55934610 55937135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02364 1 475 C2C2-Dof Transcription Factor Family AT3G47500 47.992 2.52e-122 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst9g02364 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02364 - - gsj:114409713 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04706 3 98856711 98859221 Spst9g02364 9 55934610 55937135 ECH
Spst3g02390 3 67884812 67888050 Spst9g02364 9 55934610 55937135 ECH
Spst9g02364 9 55934610 55937135 Spst9g02364 9 55934610 55937135 ECH