Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01414 ATGTTCCCACATAGCCTTATAGGTGCTGCTGCCCTTCAACAGATGTTGCATCATCATCATCATCATCACTTTCCAACCCCAATGGAACAGCGTTCCAGGTGGAAACCCAACATTGAGGTCGCACCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCCCGGTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGTGGCTCTCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGAACCGCCGCGGAAAGTCCTCCTCGCGCCACCACCCAACCCAACGCTCTTTCAACTCCGCTTCCGAGGACACGGAGTCTTCACTTGATGATGCCCATCCAAACAACAACGGGTCTCGTGAAATTGACATGGCCCTTGTGTTCGCCAAGTTCTTGAACCCCAAACAACAAGTTGCAGAGGATCACAATGGCTCGTCTTCTTCCAACAATTACTTAACGCCTGAGAGCGTTGAAACCGAGAGTGATATTGCAGCTGTTCAGTCCCAGAACAGGGGTTCGTCGGATCTTGTCCTCGAAGAGTTTGACGCTGATGCAGTGGTGGGAATTGGGAATTTTGGAAGGGAGGAATTGAGTTTGGGTGAGATTAACGAGTTGGAGAGGCTTCTGGGTGTGTGTGGTGATGAAGATGGTCTCTGGTGTGATGCTACCTTGTCCTCTTCGGTTACTTGGGAACTTCCCGTGAAGGAAATGCCGTTGCAGGAGTTGGAATACTCGATGCCGTTGTTGAATGAGAATGATGACCAATTACTACCCATCACTTCTTCATCTACCATGAATTCAATGAGCGACACTTGCTGGAGTACTTGGAGTTCCTTTGATCCTTCAACCATGGAGGTGTTCTCGTCAACTCCTTGA 912 0.5066 MFPHSLIGAAALQQMLHHHHHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRGKSSSRHHPTQRSFNSASEDTESSLDDAHPNNNGSREIDMALVFAKFLNPKQQVAEDHNGSSSSNNYLTPESVETESDIAAVQSQNRGSSDLVLEEFDADAVVGIGNFGREELSLGEINELERLLGVCGDEDGLWCDATLSSSVTWELPVKEMPLQELEYSMPLLNENDDQLLPITSSSTMNSMSDTCWSTWSSFDPSTMEVFSSTP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01414 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 170 IPR045174 GO:0003700|GO:0006355
Spst9g01414 303 MobiDBLite consensus disorder prediction 150 169 - -
Spst9g01414 303 MobiDBLite consensus disorder prediction 104 127 - -
Spst9g01414 303 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Spst9g01414 303 Pfam Dof domain, zinc finger 42 96 IPR003851 GO:0003677|GO:0006355
Spst9g01414 303 MobiDBLite consensus disorder prediction 86 129 - -
Spst9g01414 303 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01414 Spst-Chr9 14090492 14091403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01414 34 292 C2C2-Dof Transcription Factor Family AT3G52440 38.828 6.66e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst9g01414 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01414 - - vra:106778892 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01414 9 14090492 14091403 Spst9g01414 9 14090492 14091403 ECH
Spst8g01807 8 21868489 21869412 Spst9g01414 9 14090492 14091403 PCT