Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00596 ATGGAGAGAAATATGTACATTGCTCCACTGAACATTTCTTCCAGAGGTGCTACACTGATAGATGAAATTTCCCATCATTCCACCTCAAATCCTCTCAGTCAATGCTACTCACTTGACCTTAATAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCCATAAGTAAAGCCCATGCCGATGCTTGCTTCATTAATCCATCAATTATTGCTGACTCTAGTCCATTAGTTACATCACAAGGAAAGACTATTGCGGGAGATACCTCAAATCCCATGGAGAACACTGAGTTTCAAGAGCATTTAGTTGGAGGAATGCCACTCACTCCTGCTTCGCTTGCTGCAATTCTTGCTGCTGGAATAGGTCTTGAAGATAATTTGGAGAATTCGGCAGCCCTGCCTCCTTCAATCAGCTCAATGGGGGCACTGGGGGCATTCTTCAACAATTTGCAAGGTACTTCAAACCCTTTTTCTGGAAATTTTGAGGACTGTGGTTACAATGAAGTTCCTAGTAAATGGGATGCTAACAAATTTCATAAAGCTCCAGAGATTGATGGAACTTGTCAGCCTTGTTCTTCTATATCTAACTTGGATCTAAATGAATGGGCAACATCTAACGTTGCAAGCATGGCAAATAATGCTTACCATGCCTCTAACTTCAGTAAGGAACTTTCTCTAAGTCTTGCAACATCTACAACCGGAGGACAGTGCTCGGAGATGAGTTGCTCTAACATGACCCCATGCATGAATGGAACCATTTCCTGCAGCAGCAGCAGCAGCAGCAGGAGTAGGGAACTTGCTATGAATTTGGGTGGTAATAAATATTTACAGTTTTCACCAGAAGTATTGGAATCGAGATACCTTGTTGGGATTCAAGAGATACTAGATCAAATTGCAAGATATTCATTTGAAAATCTAGAACAGTTAAATTATTCAGCACCTGGTTATAGAGCAGGTGGAAACAAATCAGCACCCAAGAGAAATATCTTGAGAGATCACAATGCAAATTCTATGTACGAATCTCCTGCAGAGTCTCCATTGCAAAGGCATGCTGCTGAATCAAAGAAAGCTCAACTGCTGACACTTCTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCCGCTACAGAGCTGGACCCGCAAATACATGCACATTTTGCTCTTCAAACCATCTCTGTTCTTTACAAGGAATTACGAGAGAGAATTAGCAACTACATTCTTTCCATGGGATCAAATTTCAAAAAATCGTGCTCAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGCTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGGGCTTGGATGTTTCAGAATTTCCTTCACCCGTATCCTAAAGATGCAGAGAAACATTTACTTGCAGTAAAAAGTGGGTTGACTAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATACAGAGTAACCATGGAAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1689 0.4127 MERNMYIAPLNISSRGATLIDEISHHSTSNPLSQCYSLDLNNQSHIINGISMLSGEQGEPISKAHADACFINPSIIADSSPLVTSQGKTIAGDTSNPMENTEFQEHLVGGMPLTPASLAAILAAGIGLEDNLENSAALPPSISSMGALGAFFNNLQGTSNPFSGNFEDCGYNEVPSKWDANKFHKAPEIDGTCQPCSSISNLDLNEWATSNVASMANNAYHASNFSKELSLSLATSTTGGQCSEMSCSNMTPCMNGTISCSSSSSSRSRELAMNLGGNKYLQFSPEVLESRYLVGIQEILDQIARYSFENLEQLNYSAPGYRAGGNKSAPKRNILRDHNANSMYESPAESPLQRHAAESKKAQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKELRERISNYILSMGSNFKKSCSEENEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGIQSNHGNRISMSNQRFNVN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00596 562 SMART prehox3 281 421 IPR006563 -
Spst9g00596 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Spst9g00596 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Spst9g00596 562 SMART HOX_1 463 527 IPR001356 GO:0003677
Spst9g00596 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Spst9g00596 562 Pfam Associated with HOX 287 420 IPR006563 -
Spst9g00596 562 Gene3D - 466 545 - -
Spst9g00596 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
Spst9g00596 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 214 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00596 Spst-Chr9 5282986 5285128 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst9g00596 POX 2.1e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00596 9 5282986 5285128 Spst9g00596 9 5282986 5285128 ECH
Spst8g02326 8 34252647 34255831 Spst9g00596 9 5282986 5285128 PCT