Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00495 ATGGCTTCCGCGAAGGACATGGATCGGATAATAGGGCCATGGAGTCCCGAAGAGGACGAAGCCTTGCGGAGGTTGGTTCAGATTCACGGGCCTAGAAACTGGTCCATCATAAGCAAATCCATTCCGGGACGGTCTGGGAAATCGTGCCGGTTGCGGTGGTGCAATCAGCTGTCGCCCGAGGTGGAGCACCGCCCTTTCACGGCGGAGGAAGACGAAACGATACTAAAGGCGCACGCCAGGTTAGGGAACAAGTGGGCCACCATCGCTCGCTTGCTCAACGGCCGGACCGACAACGCCATCAAGAACCATTGGAATTCCACCCTAAAGAGAAAATGCTCCGACCCTCCCTCCCACCCTCAGCCCCTGAAAAGACATGCCACCGGTTCGAGTAGCCCACCCGGATCCGATTTGAGCGAGTCGGGTTTACCCGCTACTTATCCGATCCCTATTTACCAACCTCTTCTGCGGAGGGTAAGTGTGAACCTCGTGCCCTCAACCCTACTTACGGAAAGTGCATCTTCTTGCGCAACTCATCTGGCGACCTCACTGAGCCTGTCTCTACCTGGATCCAATTCGTGCGATGGGGATAACAATGGACCTGCGTCTGGTCCTAGTCCGAATGAGGGGCCTAGTTGCGAGCGGACGGAAGAGATGAGGCTTAAGTCGGAGCTCTTCTTCAGCGAAGAGTTGTTGAAGGTGATGCAAGATATGATACGAGTTGAAGTGAGGAATTACATGTCTGGACTGGAACGAAACGGTGTGTATGCAAACCAATGCCATTAG 783 0.5441 MASAKDMDRIIGPWSPEEDEALRRLVQIHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDETILKAHARLGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSDPPSHPQPLKRHATGSSSPPGSDLSESGLPATYPIPIYQPLLRRVSVNLVPSTLLTESASSCATHLATSLSLSLPGSNSCDGDNNGPASGPSPNEGPSCERTEEMRLKSELFFSEELLKVMQDMIRVEVRNYMSGLERNGVYANQCH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00495 260 ProSiteProfiles Myb-like domain profile. 12 57 IPR001005 -
Spst9g00495 260 MobiDBLite consensus disorder prediction 188 213 - -
Spst9g00495 260 CDD SANT 65 108 IPR001005 -
Spst9g00495 260 SMART sant 62 110 IPR001005 -
Spst9g00495 260 SMART sant 10 59 IPR001005 -
Spst9g00495 260 MobiDBLite consensus disorder prediction 107 141 - -
Spst9g00495 260 MobiDBLite consensus disorder prediction 123 138 - -
Spst9g00495 260 FunFam Transcription factor MYB44 65 111 - -
Spst9g00495 260 FunFam MYB transcription factor 11 62 - -
Spst9g00495 260 Gene3D - 64 130 - -
Spst9g00495 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Spst9g00495 260 Gene3D - 12 62 - -
Spst9g00495 260 MobiDBLite consensus disorder prediction 188 209 - -
Spst9g00495 260 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Spst9g00495 260 CDD SANT 13 55 IPR001005 -
Spst9g00495 260 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Spst9g00495 260 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Spst9g00495 260 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Spst9g00495 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Spst9g00495 260 PANTHER MYB PROTEIN-RELATED 12 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00495 Spst-Chr9 4456494 4457276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00495 5 254 MYB Transcription Factor Family AT4G37260 47.157 1.10e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g00495 Myb_DNA-binding 2.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00495 9 4456494 4457276 Spst3g04065 3 91587690 91588900 ECH
Spst9g00495 9 4456494 4457276 Spst9g00495 9 4456494 4457276 ECH
Spst8g02201 8 31776119 31776940 Spst9g00495 9 4456494 4457276 PCT