Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00489 ATGGGGAAAAATATATCTTCCACGGCCACCATCCTCATCGTGTTCTTCATGGTCTTAGCAGTGTCATCGTCGTTGGACATGTCTATAATCTCGTACGACAGAACCCACGCAGACAAGACAGTGTGGAGGGGCGACGAGGAGGTAAGAAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGCATAGCGCCCTCGCCGAGAAAGAAAAGAGTTTTCAGATTTTCAAAGACAACCTCAAGTTTATCGACGAGCACAACGCTGAGATCCGGACATACAAGGTTGGTCTGAACCGGTTCGCTGATCTTAGCAACGAGGAATACCGGTCCAAGTACCTGAGAAACAAGATTAACCCTCTCAGGATGATGGCGAAGCCAAGTAACCGTTACGCTCGGCGCGTGGGTGACAACTTGCCGGAATGTGTTGATTGGAGGAAAGAAGGTGCTGTGGTGAGAGTCAAAGACCAAGCAGAGTGCGAGGGTTGCTGGGCATTCTCAGCAATTGCGGCAGTGGAAGGGATTAACAAGATAGTAACAGGCAATCTAACTGCATTATCAGAGCAAGAACTGTTGGATTGTGACCGAACAGTGAACGCAGGATGCGGTGGGGGACTTGTGGATTACGCCTTTGAGTTCATTATCAACAATGGTGGCATTGACACCGAAGATGATTATCCCTTTCAAGGTGCTGATGGTGTATGTGATCAAAATAAGCAAAATGCTAAAGCTGTTACAATTGATGGTTATGAACGTGTTCCTGCTTATGACGAGTTAGCCTTGAAAAAGGCAGTAGCAAATCAACCAGTGAGCGTTGCCATTGAAGCATATGGCAAAGGGTTTCAGTTATATGAATCAGGTATATTCACAGGAACATGTGGTACTGCAATAGATCATGGTGTTGCAGCTGTTGGTTACGGTACAGAAAATGGAACTGACTATTGGATCGTGAAGAATTCATGGGGTAAGAAATGGGGAGAGGAAGGTTATGTAAGAATGGAACGAAATATAGCAGAAGACACTGCAGGAAAGTGTGGAATTACGATTCTTTCATTCTATCCCATTAAGAGTGGCCAAAATCTGTCAAACCCTGTCAACTTCAGTCACCCACCGGAACTTCACAGGTAG 1125 0.4587 MGKNISSTATILIVFFMVLAVSSSLDMSIISYDRTHADKTVWRGDEEVRSIYEEWLVKHGKVHSALAEKEKSFQIFKDNLKFIDEHNAEIRTYKVGLNRFADLSNEEYRSKYLRNKINPLRMMAKPSNRYARRVGDNLPECVDWRKEGAVVRVKDQAECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCGGGLVDYAFEFIINNGGIDTEDDYPFQGADGVCDQNKQNAKAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKGFQLYESGIFTGTCGTAIDHGVAAVGYGTENGTDYWIVKNSWGKKWGEEGYVRMERNIAEDTAGKCGITILSFYPIKSGQNLSNPVNFSHPPELHR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00489 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Spst9g00489 374 FunFam Cysteine protease 1 28 356 - -
Spst9g00489 374 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Spst9g00489 374 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Spst9g00489 374 Gene3D Cysteine proteinases 24 356 - -
Spst9g00489 374 SUPERFAMILY Cysteine proteinases 45 354 IPR038765 -
Spst9g00489 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Spst9g00489 374 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Spst9g00489 374 CDD Peptidase_C1A 139 353 IPR039417 -
Spst9g00489 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Spst9g00489 374 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Spst9g00489 374 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Spst9g00489 374 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Spst9g00489 374 SMART Inhibitor_I29_2 52 108 IPR013201 -
Spst9g00489 374 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 45 347 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00489 Spst-Chr9 4386677 4388814 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00489 9 4386677 4388814 Spst3g04055 3 91492051 91494099 ECH
Spst9g00489 9 4386677 4388814 Spst2g02563 2 25362310 25364440 ECH
Spst9g00489 9 4386677 4388814 Spst9g00489 9 4386677 4388814 ECH
Spst8g02189 8 31591597 31596068 Spst9g00489 9 4386677 4388814 PCT