Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00468 ATGCAAGGGCAGAGAGGTACAGTTGGTTCAATGCCAGAAACTTTAGAATTTGACTGTGGCTCTACACCAGGTAATTCGACTATGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCACCTTATGTGAATCCTATCAATGGATGGCAAAATTTGGGTGGATGGAGCTTAGGGGAGCCCAGTTCTAGCAATACACCAAATGAGATTAACAATAATGAGCAAAAAAGAGAACTTGGATGGACATCAACCACTACTGCTGGTACAAGACTGGAAGAAAGGCGCCTTGAACCAACCAATACTTTTTCACTAGACAATGATAATGCAAGTCCTATGTACATGCGCAGCCCCAATTCTCGCTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATAATAGTCAACATCTGGAGCTCCCTAACTTACATATGTCTAGTGGGTCAGCAAATGAGTGCTTACCATCTAATGTTGGGTCTGGTTCTTTTTTGCTTCCTTCGGCAAATAATGGCTTCCTGGTAGAAGATTCTGATGGTAGGCCAGGTTCTCTTGATACTCGACGTGTCTCTTGCAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATACAGATGGTAGTGCTTGGCATGACATTCCTGGTCAGGATAATGCTGGAAGCAGTTCAAACAGACCTGTTTCCTCAGAACAGGTAAATGCAAGACTTGGCCTGGCAATGCAGGATGAAGCATGTGAAACTGCTCGTAATTCACAAATTGCAGAAAACTTTCGCAGGAATTTCCGATTGAGGTTAAATCCTTCTAATCAACAAAATTCTGTTCCTCCCACTGCATTTTCAACTGGGGGCATGATTAGGCCGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAACTTGAGGTCAGCTCCACCAGTAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCTTTTAGATGGAGTGGTGGCTCTAGCTCAAGAAATATCCATTCATCAAACCCAATTATATGTGCAGACAGAGACCAAGAGGATGCAAGCTCAGGAAGAATGTCTAGAAATATTTTAGAACATCCAGTTGTTGTACCTCCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGCAGTGAAAATTTAAGCATTCCAGGAAATGTTGCATCTTCATCACAGGCTGGATCCAATCCAGCTACCAACCCCTCATCTGCCTCAACATGGGTTTCTCGTCCCAATCCTCCACAACATCCGCGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGCTATTGGAAATCCAAACAATACTTATTCTTCCTTTCGCTCTAGTCTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGACTGGGGCAAATCCACGATCATCTTCATGGATGGAGAGGCAAGGAGACAATGAATTTGGAATTCCTTATTCACTACGTGCATTGGATTTTGCAAGTGAAGGAAGTAGTAGACTAGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGAAGAGGTGGGAATGTGCGGTTTGAGGTTAGTCATTCTAAATTAATGGCGGATAATGGCTTCAAAGATGGTTCCTTTCTCATTGATTACAGAGAGGATTGGGTTGCCTTCATTGCACACTCAGATTTAGACCTGTTTGACACTATTCGTGCATCTGTCAGTTTTGATGAGCCTGTGGAGGTAGAAGGCTCAAGGCCTTGGAAGGTTTATGATAGGAAGAAAAAAGAAACAGCCCAAGACTGGCAAGATGTTGTGATCCTTGATCATCAGTCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGGAATGTGAGTACTGGATTGAGTGAAGAAACCGTATTGAAACTCTTGAAACAGAAAAAGCACGCGGTTGAAAAAGAATCTCAGATTGATGCTGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGCGGCCATGATTTCCATAGCGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGCAAGACAACAGGCTTGGCAACATGA 2316 0.4283 MQGQRGTVGSMPETLEFDCGSTPGNSTMDQQICWNNVNPAENQIPDYILSPGDMNSPYVNPINGWQNLGGWSLGEPSSSNTPNEINNNEQKRELGWTSTTTAGTRLEERRLEPTNTFSLDNDNASPMYMRSPNSRLMSQNLNLNAGLADSGSDNSQHLELPNLHMSSGSANECLPSNVGSGSFLLPSANNGFLVEDSDGRPGSLDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHTDGSAWHDIPGQDNAGSSSNRPVSSEQVNARLGLAMQDEACETARNSQIAENFRRNFRLRLNPSNQQNSVPPTAFSTGGMIRPSGVSSSSQASQRFHSVDNSLNLRSAPPVDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNPIICADRDQEDASSGRMSRNILEHPVVVPPTDLRNLVQNPTVRASSSSSENLSIPGNVASSSQAGSNPATNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSDAIGNPNNTYSSFRSSLSTSEPRALSSGTGANPRSSSWMERQGDNEFGIPYSLRALDFASEGSSRLVSELRNVLGLMRRGGNVRFEVSHSKLMADNGFKDGSFLIDYREDWVAFIAHSDLDLFDTIRASVSFDEPVEVEGSRPWKVYDRKKKETAQDWQDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKHAVEKESQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00468 771 MobiDBLite consensus disorder prediction 488 529 - -
Spst9g00468 771 MobiDBLite consensus disorder prediction 73 104 - -
Spst9g00468 771 MobiDBLite consensus disorder prediction 485 529 - -
Spst9g00468 771 MobiDBLite consensus disorder prediction 424 473 - -
Spst9g00468 771 SUPERFAMILY RING/U-box 709 767 - -
Spst9g00468 771 MobiDBLite consensus disorder prediction 216 259 - -
Spst9g00468 771 Pfam Ring finger domain 724 765 IPR001841 -
Spst9g00468 771 MobiDBLite consensus disorder prediction 424 467 - -
Spst9g00468 771 ProSiteProfiles Zinc finger RING-type profile. 724 765 IPR001841 -
Spst9g00468 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 768 IPR013083 -
Spst9g00468 771 MobiDBLite consensus disorder prediction 73 129 - -
Spst9g00468 771 MobiDBLite consensus disorder prediction 214 259 - -
Spst9g00468 771 FunFam E3 ubiquitin-protein ligase MBR2 692 769 - -
Spst9g00468 771 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 154 769 IPR045191 GO:0061630
Spst9g00468 771 SMART ring_2 724 764 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00468 Spst-Chr9 4103047 4109568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00468 647 771 C3H Transcription Factor Family AT2G15530 62.016 8.76e-50 184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00468 9 4103047 4109568 Spst9g00468 9 4103047 4109568 ECH
Spst8g02173 8 31124458 31128048 Spst9g00468 9 4103047 4109568 PCT