Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00466 ATGGCTCTTCTTCTTGACAACTGTGAAGGCATTCTACTCTCTCTGGACTCGCACAAATCAGTGCCAGCTCCTTTCCTCACCAAAACATACCAACTGGTGGATGATCCCGCCACAGATCACATCGTTTCATGGGGTGAAGACGACACCACTTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGGGACCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAGCTAAATACCTATGGTTTCAGAAAGATTGTACCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGGAGAAAAACCGCTCAGCCTCAACAAGGAAGCATGAATCACCATCACCACCATTCACATTCTCCACTTGGAGTCAACGTTAGCGTTCCCACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATCTCACCCTCCAACGACTCCGATGAGCAAACCAATTGGTGTGACTCTCCGCCACGTGGAGCCACCTCATTAGTGAACGGTGCAGCCAACTACAGCTCTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTCAGGCGAAGCAACAACATGCTGATGTCGGAACTCGCGCACATGAAGAAGCTCTATAATGACATTATCTACTTCGTTCAGAACCATGTAAAGCCAGTGGCACCAAGCAACTCTTACTCATCTTCCTTGCTACTATGTAATACACCTGCTGCTACTCCAATAAATGGTGGCCATGTTTCAATGATGCAAAGGCCAATGAACCAGCTTCTGGGATATTATTCTACTAACCCTAAACAAGGAACTACTCCAATAAATCAACATCAGCAACACCAACCTCAGACCTATGCTGTGAACTCCCCCACCAACACATCAAGGAGTTCTATAACGATTGTTGAAGGATCTAACGGTAACATTAATAGCTGCAAGACCAAACTTTTTGGGGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCGGATTATGGATCTAATCCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGTTTGAATCTCATGCCTCCATCCACTTGTTAG 1095 0.4731 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSNDSDEQTNWCDSPPRGATSLVNGAANYSSSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPAATPINGGHVSMMQRPMNQLLGYYSTNPKQGTTPINQHQQHQPQTYAVNSPTNTSRSSITIVEGSNGNINSCKTKLFGVSLQSKKRVHPDYGSNPETNKARLVLEKDDLGLNLMPPSTC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00466 364 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 FunFam Heat stress transcription factor B-4 17 115 - -
Spst9g00466 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 289 IPR027725 -
Spst9g00466 364 Gene3D - 17 116 IPR036388 -
Spst9g00466 364 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst9g00466 364 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Spst9g00466 364 Coils Coil 187 207 - -
Spst9g00466 364 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00466 Spst-Chr9 4084822 4086014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00466 1 363 HSF AT1G46264 56.510 7.22e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst9g00466 HSF_DNA-bind 2.8e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00466 9 4084822 4086014 Spst9g00466 9 4084822 4086014 ECH
Spst8g02167 8 31008328 31010001 Spst9g00466 9 4084822 4086014 PCT