Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00439 ATGCAACCAACAACCAACGGCTCTGATTCGCAAGTCACCGAACAGAACCAGCAGACGCCGCCACCCCCGCAGCCTGTCCCCATCCCGCAGCAGTGGGTGCCGATGCAGTACCCCGCCGCCGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCAGCGCCGGCGCCGCAGACCTACGTCGCCTACCACCAGTACCAGCAGCAGCTCCCGCACGTGCCGCACGCACACCATCAGGGATCCAGCGCCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGATGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAACAGACTGGTCTATCAGAGGGTTACGGATTTGTGGAATTCTATTCGCATGGCACGGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTCGTAGGAGATTTAGCTGCGGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCCATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAATCAAATGGCACATCCAACCAATCTGAAGCTGATTCTACAAACACAACCATATTTGTTGGAGGTCTTGATCCTAACGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGGGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGCGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGAACAACTGTTGGCAAGCAGATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTAGATTTCGGCAGCCCTTGGAGTGGGGCGTATTATGGGGGGCCTGTCTATGATGGTTATGGATATGCTTTACCACCTCCTCATGACCCCAGCATATATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGCTGA 1257 0.4901 MQPTTNGSDSQVTEQNQQTPPPPQPVPIPQQWVPMQYPAAAMVMQHHMMPPQHYAAPAPAPQTYVAYHQYQQQLPHVPHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQMVRLSWGRNPANKQFRVDFGSPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPIYGGHQQQVS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00439 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Spst9g00439 418 FunFam Polyadenylate-binding protein RBP47 273 390 - -
Spst9g00439 418 MobiDBLite consensus disorder prediction 1 17 - -
Spst9g00439 418 FunFam Polyadenylate-binding protein RBP47C isoform A 182 258 - -
Spst9g00439 418 Gene3D - 265 367 IPR012677 -
Spst9g00439 418 MobiDBLite consensus disorder prediction 259 291 - -
Spst9g00439 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Spst9g00439 418 FunFam Polyadenylate-binding protein RBP47C isoform A 89 169 - -
Spst9g00439 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Spst9g00439 418 CDD RRM3_NGR1_NAM8_like 287 358 - -
Spst9g00439 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 364 - -
Spst9g00439 418 SUPERFAMILY RNA-binding domain, RBD 182 361 IPR035979 GO:0003676
Spst9g00439 418 MobiDBLite consensus disorder prediction 263 291 - -
Spst9g00439 418 SUPERFAMILY RNA-binding domain, RBD 62 156 IPR035979 GO:0003676
Spst9g00439 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 351 IPR000504 GO:0003723
Spst9g00439 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Spst9g00439 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Spst9g00439 418 Gene3D - 182 258 IPR012677 -
Spst9g00439 418 Gene3D - 89 169 IPR012677 -
Spst9g00439 418 MobiDBLite consensus disorder prediction 1 30 - -
Spst9g00439 418 CDD RRM2_SECp43_like 182 261 - -
Spst9g00439 418 CDD RRM1_SECp43_like 91 171 - -
Spst9g00439 418 SMART rrm1_1 184 258 IPR000504 GO:0003723
Spst9g00439 418 SMART rrm1_1 289 356 IPR000504 GO:0003723
Spst9g00439 418 SMART rrm1_1 91 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00439 Spst-Chr9 3896803 3901544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00439 91 386 Eukaryotic Initiation Factors Gene Family AT2G23350 27.097 3.10e-21 94.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00439 9 3896803 3901544 Spst9g00439 9 3896803 3901544 ECH
Spst8g02121 8 30018829 30022248 Spst9g00439 9 3896803 3901544 PCT