Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00342 ATGGAAGAAGTGGTGTCATCCTTTGAAATGATAGCAGGATTGGGAGCTGCCAAGTGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGCAGCTTGAAAGATGCCATATTGTCGCAAATAAATGCTGAGAAAAGAAAACTTTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGGGACATCAGACACAGTAGAATGTCTCTCCAACAACTTGGGGTGATTCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATCCTTCGTTCATGGCTTTTTGAGCATTTCCTCCACCCTTACCCGAATGATTCTGAAAAGCTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAGCCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGGGAGTCTTCGGAAGATTCCAACCCGGCTGCTAACAACTGCTTAACGAGGGAAGATACCACAGATTGTGTAGAGGATTGA 564 0.4379 MEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLKDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDIRHSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAANNCLTREDTTDCVED 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00342 187 Pfam Associated with HOX 1 39 IPR006563 -
Spst9g00342 187 CDD homeodomain 91 152 IPR001356 GO:0003677
Spst9g00342 187 SMART HOX_1 91 155 IPR001356 GO:0003677
Spst9g00342 187 Pfam Homeobox KN domain 108 147 IPR008422 GO:0003677|GO:0006355
Spst9g00342 187 ProSiteProfiles 'Homeobox' domain profile. 110 151 IPR001356 GO:0003677
Spst9g00342 187 MobiDBLite consensus disorder prediction 160 187 - -
Spst9g00342 187 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 169 - -
Spst9g00342 187 SUPERFAMILY Homeodomain-like 97 159 IPR009057 -
Spst9g00342 187 Gene3D - 85 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00342 Spst-Chr9 3203102 3203848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst9g00342 Homeobox_KN 9.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00342 9 3203102 3203848 Spst9g00342 9 3203102 3203848 ECH
Spst8g02326 8 34252647 34255831 Spst9g00342 9 3203102 3203848 PCT
Spst9g00342 9 3203102 3203848 Spst8g01954 8 26037431 26039223 PCT