Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00335 ATGGAAACCATTACCAATTCCGTTTCTAAGTTACTAACATTGTTTTTAACGGTCTTGTTTGTGGGTTCTGAGCTGATACATTGCAATGTCACCTACGATAGAAAGTCTCTTCTCATCAATGGCCAAAGGAGAATCCTCATTTCTGGTTCCATTCACTATCCCAGAAGCACCCCTGAGATGTGGGAGGATCTGATTAGGAAGGCAAAACATGGAGGTCTTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCATCTCCTGGCAATTATAATTTTGAAGGAAGGTATGATCTAGTACGGTTTATTAAGACGGTGCAGAAGGTGGGGCTTTATGCCAACCTTCGAATTGGACCTTATGTATGCGCTGAATGGAACTTTGGAGGAATTCCTGTATGGTTGAAGTATGTTCCTGGCATAAGCTTTAGAACGGACAATGAACCTTTCAAGGCAGCAATGCAAGGTTTCACGCAGAAAATTGTCCAGATGATGAAGAGTGAGAAGTTGTTTCAGTCTGAGGGTGGTCCAATAATTCTCTCTCAGATTGAGAATGAGTACGGACCAGAGAGCAGGGCAATGGGAGCTGCTGGTCGTGCATATTTAAACTGGGCGGCAAGCATGGCTGTTGGATTGGGCACAGGAGTGCCCTGGGTGATGTGCAAGCAAAATGATGCCCCAGATCCTGTCGTAAGTCCTCTTATTCTCTTGCTTGTCTCATTTGCTTCATTACTATTTTGTTTGAGGGTTGAATATGATCTATCCAATCCTCCGTTACAGATCAATTCATGTAATGGTTTTTACTGTGATGATTTCACTCCAAATAAACCATACAAGCCTAGCATGTGGACTGAGTCTTGGAGTGGCTGGTTTACAGATTTTGGTGGCCCAATTCACCAGCGACCAGTTCAGGATCTATCATTTGCAGTTGCTCGTTTCATTCAAAAGGCTGGAGGCCCATTCATTACTACAAGCTATGACTATGACGCTCCAATTGATGAATACGGTTTGATCAGGCAACCCAAATACAGTCATTTGAAGGAGCTTCATAGAGCTATCAAGCGGTGTGAACATGCTTTGGTTTCGTCGGATCCCACAGCTCATGTATACTCTTCAGGTGGTGGAACATGTGCCGCTTTTCTAGCAAACTATAATGCAAATTCTGCTGCTACGGTGACATTCAATAACAGGCACTATGATTTACCTCCTTGGTCCATAAGCATCCTTCCTGATTGCAAAACTGATGTATTTAATACTGCAAAAGTGAGAATTCAAACTTCACAGGTAAAAATGCTTCCTGTCAATACTAAGTTTTTCTCATGGGAGAGCTATGATGAAGATCTATCTTCTCTGGCTGAGAATTCAAGGATTACATCACCTGGACTTCTAGAACAACTCAATATTACCAGGGACACCAGTGACTACCTGTGGTACATAACCAGCATTGACATAAGTTCATCAGAAAACTTTCTTCGAGGTGGACAAAAGCCCAGCATTAATGTGCAGTCTGCAGGACACGCTGTTCATGTGTTTGTTAATGGGCAATTTTCAGGGTCGGCTTTTGGGACAAGGGAGCAGAGAAGTTGCACATTTAATGGACCTGTAGATCTCCACGCTGGAATAAATAAAATTGCTCTTCTCAGCGTGACTGTTGGATTACCTAATGTTGGTCGGCATTACGAAACATGGGAGACGGGGATCACTGGTCCAGTTTTGCTCCATGGCCTTGATCAGGGACAGAAAGATTTAACGTGGAATAAGTGGTCCTATAAGGTTGGCCTCAGAGGAGAGGATATGAATTTGGTGTCTCCCAATGGGGTCTCGTCTGTGGATTGGGTCCAAGAATCACTGGCTACACAAAGCCGGTCGCAGTTAAAATGGTACAAGGCTTATTTTGATGCACCCCGGGGAAAGGAACCACTGGCTTTGGACCTAGAAAGCATGGGTAAGGGTCAAGTTTGGATCAACGGGCAAAGCATAGGGAGATATTGGATGGCTTATGCAAAGGGTGATTGTAATTCGTGCACATATTCTGGGGCCTTTCGCCCTGTAAAGTGCCAACTTGGTTGTGGCCAACCCACTCAACGATGGTATCACGTTCCAAGGTCCTGGCTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAAATCTCTTTGATCAAGAGAATGGTACATACTCCGGCAGTTCAGGGACAGTGA 2223 0.4404 METITNSVSKLLTLFLTVLFVGSELIHCNVTYDRKSLLINGQRRILISGSIHYPRSTPEMWEDLIRKAKHGGLDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYANLRIGPYVCAEWNFGGIPVWLKYVPGISFRTDNEPFKAAMQGFTQKIVQMMKSEKLFQSEGGPIILSQIENEYGPESRAMGAAGRAYLNWAASMAVGLGTGVPWVMCKQNDAPDPVVSPLILLLVSFASLLFCLRVEYDLSNPPLQINSCNGFYCDDFTPNKPYKPSMWTESWSGWFTDFGGPIHQRPVQDLSFAVARFIQKAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHRAIKRCEHALVSSDPTAHVYSSGGGTCAAFLANYNANSAATVTFNNRHYDLPPWSISILPDCKTDVFNTAKVRIQTSQVKMLPVNTKFFSWESYDEDLSSLAENSRITSPGLLEQLNITRDTSDYLWYITSIDISSSENFLRGGQKPSINVQSAGHAVHVFVNGQFSGSAFGTREQRSCTFNGPVDLHAGINKIALLSVTVGLPNVGRHYETWETGITGPVLLHGLDQGQKDLTWNKWSYKVGLRGEDMNLVSPNGVSSVDWVQESLATQSRSQLKWYKAYFDAPRGKEPLALDLESMGKGQVWINGQSIGRYWMAYAKGDCNSCTYSGAFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLIKRMVHTPAVQGQ 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00335 740 Pfam Glycosyl hydrolases family 35 36 352 IPR031330 -
Spst9g00335 740 SUPERFAMILY Galactose-binding domain-like 585 731 IPR008979 -
Spst9g00335 740 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Spst9g00335 740 Gene3D Glycosidases 23 356 - -
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 320 336 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 650 666 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 PRINTS Glycosyl hydrolase family 35 signature 623 637 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 Pfam Beta-sandwich domain in beta galactosidase 366 422 IPR041392 -
Spst9g00335 740 PANTHER BETA-GALACTOSIDASE RELATED 20 732 IPR001944 GO:0004553|GO:0005975
Spst9g00335 740 Gene3D - 602 736 - -
Spst9g00335 740 FunFam Beta-galactosidase 308 424 - -
Spst9g00335 740 FunFam Beta-galactosidase 595 736 - -
Spst9g00335 740 Gene3D - 442 590 - -
Spst9g00335 740 FunFam Beta-galactosidase 450 587 - -
Spst9g00335 740 SUPERFAMILY Galactose-binding domain-like 406 577 IPR008979 -
Spst9g00335 740 Coils Coil 736 740 - -
Spst9g00335 740 SUPERFAMILY (Trans)glycosidases 29 356 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00335 Spst-Chr9 3160694 3165468 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00335 9 3160694 3165468 Spst2g00869 2 7337498 7342444 ECH
Spst9g00335 9 3160694 3165468 Spst9g00335 9 3160694 3165468 ECH
Spst8g01960 8 26275075 26280350 Spst9g00335 9 3160694 3165468 PCT