Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00113 ATGCATCGAGCTAGGGCGTCAACTGTAAAAGTAACACTGAAAGAGCCTAAAAGAAAGGAGATGCAAAGGGCAACGCAAGGCGAAGAAGAAGTAGTATCAAGGGGTTCTAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCGAGGTGCAGAACTTGTTGCAAGAACAAAGGGTTTCACTGCCAAACCCATATCAAGAGTACATGGACTCCTGTGGATAAGAGACGCAACAAGGAGCAGCCACCACCATCTCCACACAACTTTCACGGACATATTCCTCAAAAGCACAACCAGATCAATCCATATTCAGGTTTAGAGAGAAAATTTCCGGCTGCTACGAATTCTATGGCTATATTTCGGTGCATTCAGGTTCGGTCAATGGATGATGCGGTTAATGAAGTAGCGTATCAAACATCTGTGAATATTGGGGGGCATGTATTTAGTGGAATACTATATGATCAAGGCCCAGAACAAAGCTATAATAATAAGGGTGAGAGTTCCACTAGCCTTGTTGATCAGCAACAGAATAATAATCTGGGTCTTATGAATAATGCTTCAATCCACAGTAGTAGGGATAGTAGTGGTGTAACTATAGCCTCTGCTGGTCACGGTGACCCTCTTTTTCCTCCACCACCGTATCCGTTTCCCCTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATATCCAAGATCTTAA 711 0.4388 MHRARASTVKVTLKEPKRKEMQRATQGEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDKRRNKEQPPPSPHNFHGHIPQKHNQINPYSGLERKFPAATNSMAIFRCIQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQSYNNKGESSTSLVDQQQNNNLGLMNNASIHSSRDSSGVTIASAGHGDPLFPPPPYPFPLASFRPGMPYFTYPRS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00113 236 NCBIfam LRP1 C-terminal domain 112 160 IPR006511 -
Spst9g00113 236 NCBIfam putative zinc finger domain, LRP1 type 37 79 IPR006510 -
Spst9g00113 236 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 27 198 IPR007818 GO:0003700|GO:0006355
Spst9g00113 236 MobiDBLite consensus disorder prediction 1 43 - -
Spst9g00113 236 MobiDBLite consensus disorder prediction 76 98 - -
Spst9g00113 236 MobiDBLite consensus disorder prediction 187 207 - -
Spst9g00113 236 MobiDBLite consensus disorder prediction 187 201 - -
Spst9g00113 236 MobiDBLite consensus disorder prediction 8 27 - -
Spst9g00113 236 Pfam Domain of unknown function (DUF702) 35 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00113 Spst-Chr9 884696 886364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst9g00113 DUF702 2.9e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00113 9 884696 886364 Spst9g00113 9 884696 886364 ECH
Spst9g00113 9 884696 886364 Spst2g00865 2 7305797 7307431 ECH
Spst9g00113 9 884696 886364 Spst2g02567 2 25389835 25390829 ECH
Spst2g02567 2 25389835 25390829 Spst9g00113 9 884696 886364 ECH
Spst8g01971 8 26652985 26654449 Spst9g00113 9 884696 886364 PCT