Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02201 ATGACATCGGAAAGCAGGGACATGGATCGGGTCAAGGGCCCCTGGAGCCCGGAGGAAGACGAGGCGTTGCAGAGACTCGTGCAGACCCATGGACCGAGGAACTGGACGGCGATAAGCAAGTCTATTCCTGGTCGTTCCGGGAAATCGTGCCGGCTGCGATGGTGTAACCAGCTCTCGCCGGAGGTGGAGCACCGCCCGTTCTTGCCGGAGGAGGATGAAGCTATTATCAGGGCCCATGCCAGGTTTGGTAACAAGTGGGCCACTATAGCTCGTTTACTCAACGGCCGCACTGATAACGCTGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCACGGTTAGTCTCGACGAAACGGATCGACCACCACTGAAAAGATCTGCCAGCGTCGGCGCCGGTTACTTAAACCCGAGCAGTCCATCCGGGTCTGATTTAAGCGATCCCGGTCAGCCCGCGTTGTCTACCCCTTCTGGTTCGGCCCATTGCAGGCCCAATCTCATGGAAACCGCTTCTTCCCTATCCGATCCAGCCACGTCACTTAGTTTGTCTCTCCCCGGCTTTGGCTCCGGCTACACGCCTAACCCTGTGGCTGTACAGCAGCCAGCATCGCAGTCGCCGTCGCCAGCGGTGGCGACAGTGGAGGAGCGTGGGAAGCAACTGTTCAACGCAGAGTTTTTGAGAGTGATGCAAGAGATGATAAGGATGGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAAGAATGGATTGAGAATACAAGCGGAAGCCATTGGAAACGCGGTGGTGAAGCGCATGGGAATCAGCAACATCGAGTGA 822 0.5596 MTSESRDMDRVKGPWSPEEDEALQRLVQTHGPRNWTAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFLPEEDEAIIRAHARFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSTVSLDETDRPPLKRSASVGAGYLNPSSPSGSDLSDPGQPALSTPSGSAHCRPNLMETASSLSDPATSLSLSLPGFGSGYTPNPVAVQQPASQSPSPAVATVEERGKQLFNAEFLRVMQEMIRMEVRSYMSGMEQKNGLRIQAEAIGNAVVKRMGISNIE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02201 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Spst8g02201 273 SMART sant 11 60 IPR001005 -
Spst8g02201 273 SMART sant 63 111 IPR001005 -
Spst8g02201 273 FunFam MYB transcription factor 12 63 - -
Spst8g02201 273 PANTHER MYB PROTEIN-RELATED 12 181 - -
Spst8g02201 273 CDD SANT 14 56 IPR001005 -
Spst8g02201 273 MobiDBLite consensus disorder prediction 116 167 - -
Spst8g02201 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Spst8g02201 273 Gene3D - 11 63 - -
Spst8g02201 273 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Spst8g02201 273 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Spst8g02201 273 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Spst8g02201 273 Gene3D - 65 130 - -
Spst8g02201 273 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Spst8g02201 273 CDD SANT 66 109 IPR001005 -
Spst8g02201 273 MobiDBLite consensus disorder prediction 134 167 - -
Spst8g02201 273 FunFam Transcription factor MYB44 66 112 - -
Spst8g02201 273 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02201 Spst-Chr8 31776119 31776940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02201 6 250 MYB Transcription Factor Family AT4G37260 52.465 9.97e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g02201 Myb_DNA-binding 3.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02201 8 31776119 31776940 Spst3g04065 3 91587690 91588900 ECH
Spst8g02201 8 31776119 31776940 Spst8g02201 8 31776119 31776940 ECH
Spst8g02201 8 31776119 31776940 Spst9g00495 9 4456494 4457276 PCT