Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02193 ATGGCACCTCACTACCCAAAACCCCTTCTAGACACCCTATACTGCTTAGAAGACCACAATCATTGGGAAGAAGAAAAACCAAGAGAAGAAGATGAATACAGAAACACCACAAAAGAGAGAAACTTCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTTTGGGACAACGAGGAACTAGCTTCTCTCCTCTCCAAAGAAAACCTTAACAACCTTTCCAACTCTCTCCTAAACATCCCCTCTTTGGCTTCATCCCGCGGAGAAGCTGTGGAGTGGATTCTCAAAGTGAATGTTCATCATTCCTTTTCTGCCCTCACAGCTCTTCTGGCTGTTAACTACCTCGATAGGTTCCTCTGCAGCTTCAGATTCCAGAACGAGAAACCATGGCTCACGCAACTCGTTGCAGTGGCGTGTCTCTCTCTAGCGGCTAAAGTTGAAGAGACCCACGTGCCCCTGTTCGTGGACCTCCAAGTGGGGGAGAGTAAATACGTGTTTGAAGCGAAAACGATTAGGAGAATGGAAATCTTGATCCTTTCCACTCTTGGATGGAAGATGAATCCGGTAACACCTCTCTCGTTTCTTGATTTCATCACGAGGAAACTTGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTTGCAGATTCAAGATTTATGAGTTTTCTACCTTCTGTGTTGGCAACTGCAACGATGATGCGTGTGGTGAGTGGTGTGGAGCCTGGTTTGGGAGAGGAATACCACGATCAGCTCTTGGGTATTCTCGGAATCGACAAGGAGAGCGTGAAAGAATGCTACAAGCTGATAATGGAGGATGTGTCAGGAAACGATGAAGAGGGTAAACGACCCGATTTGAAGAAACGCAAATTGGAGTGCATTCACTGTAGCCCAAACGACGTGATGGAAGGGTCGTTTAGTTGTGATAGTTCGTGTGATTCTTGGGAGTTAGGTGCATCCTCGAAGAAGAAAACTAGAAGTCAAGATCAGCTTCTGTTGAACCATTCAAACTCAGATTTTCTCACCATTCCTCGTTAA 1059 0.458 MAPHYPKPLLDTLYCLEDHNHWEEEKPREEDEYRNTTKERNFSDVVLSEQDLFWDNEELASLLSKENLNNLSNSLLNIPSLASSRGEAVEWILKVNVHHSFSALTALLAVNYLDRFLCSFRFQNEKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKYVFEAKTIRRMEILILSTLGWKMNPVTPLSFLDFITRKLGLKGHLCLEFLRRCETVLLSVFADSRFMSFLPSVLATATMMRVVSGVEPGLGEEYHDQLLGILGIDKESVKECYKLIMEDVSGNDEEGKRPDLKKRKLECIHCSPNDVMEGSFSCDSSCDSWELGASSKKKTRSQDQLLLNHSNSDFLTIPR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02193 352 CDD CYCLIN_AtCycD-like_rpt2 187 277 - -
Spst8g02193 352 PANTHER CYCLINS 61 280 IPR039361 -
Spst8g02193 352 SMART cyclin_7 90 178 IPR013763 -
Spst8g02193 352 SMART Cyclin_C_2 187 307 IPR004367 -
Spst8g02193 352 SUPERFAMILY Cyclin-like 188 281 IPR036915 -
Spst8g02193 352 Gene3D - 82 185 - -
Spst8g02193 352 Pfam Cyclin, N-terminal domain 83 185 IPR006671 -
Spst8g02193 352 SUPERFAMILY Cyclin-like 53 185 IPR036915 -
Spst8g02193 352 CDD CYCLIN_AtCycD-like_rpt1 85 182 - -
Spst8g02193 352 Gene3D - 186 275 - -
Spst8g02193 352 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Spst8g02193 352 Pfam Cyclin, C-terminal domain 187 286 IPR004367 -
Spst8g02193 352 FunFam D3-type cyclin 78 185 - -
Spst8g02193 352 FunFam CYCLIN D32 186 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02193 Spst-Chr8 31652234 31653922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02193 9 279 Core Cell Cycle Gene Families AT4G34160 53.137 8.60e-94 283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02193 8 31652234 31653922 Spst3g04062 3 91515254 91516710 ECH
Spst8g02193 8 31652234 31653922 Spst10g01325 10 13795246 13796920 ECH
Spst8g02193 8 31652234 31653922 Spst8g02193 8 31652234 31653922 ECH