Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02189 ATGCTGTTGTTAGCCTTCTTTGCGCTCTCTTCGGCCTTGGACATGTCCATTATCTCCTACGACAACACCCACCCAGATAAGGCCACGTGGCGCACCGACGAGGAGGTCATGTCCATGTACGAGGAGTGGCTCGTGAAGCACGGAAAAGTGTACAACGCGCTTGGGGAGAAGGATAAGAGGTTTCAGATCTTCAAGGACAACCTGCGTTTCATCGACGAGCACAGCGCGCTGAACCGAACCTACAGGTTGGGACTGAACCGGTTCGCAGATCTGACCAACGAGGAGTACAGGGCGAGGTACTTGGGAACGAGGATCGACCCAAAGCGGAGGTTGGGAAGGACCCCGAGCAACCGCTACGCGCCACGTGTCGGAGACAAACTACCAGATTTCGTTGATTGGAGGAAGAAAGGTGCAGTTGTCCCAGTCAAAGACCAAGGAGGCTGCGGGAGCTGTTGGGCATTCTCAGCAATTGGTGCAGTGGAAGGAATTAATAAGATTGTGACTGGCGACCTGATTTCATTATCAGAACAAGAATTGGTGGATTGTGATACAGGATATAACATGGGTTGCAATGGAGGGCTTATGGACTATGCATTTGAGTTCATCATCAACAATGGAGGCATTGATTCTGAGGAGGATTACCCTTACCGTGGTGTTGATGGTAGATGTGACCAGATTAGGAAAAATGCTAAAGTTGTTGTTATTGATGGTTACGAAGATGTGAATGCCTATGACGAGTTAGCCTTGAAAAAGGCAGTTGCAAATCAGCCTGTGAGCGTAGCTGTTGAAGGAGGAGGCAGGGAATTTCAATTATATTCATCTGGTGTTTTCTCTGGAAGATGTGGGACTGCACTGGATCATGGTGTTGTGGCTGTTGGGTATGGTACAGAAAATGGTCATGATTATTGGATTGTGAGGAATTCATGGGGTGATAGCTGGGGAGAGGCAGGGTACATCAGATTGGAAAGAAATCTGGCTAACAGTAGATCAGGAAAGTGTGGAATTGCAGTAGAGCCATCTTATCCCGTTAAGAGTGGTCCAAACCCACCCAATCCTGGACCATCACCCCCTTCACCCGTGAAGCCACCAAATGTTTGTGACAATTACTACAGCTGTTCTGATTCTGCCACTTGTTGCTGCATTTTTGAGTTTGGAAACTCTTGCTTCGAGTGGGGTTGCTGTCCTCTTGAAGGTGCTACCTGCTGTGATGACCATTACAGCTGCTGCCCCCATGACTATCCCATCTGCAACACTTACGCTGGAACTTGTCTCAGGAGCAAGAACAACCCATTTGGAGTGAAGGCATTGAGGCGAACTCCAGCCAAACCTCATGGTGCCTTTGAAGGTAACAAGGTCAGCAAGGCTTAA 1368 0.4876 MLLLAFFALSSALDMSIISYDNTHPDKATWRTDEEVMSMYEEWLVKHGKVYNALGEKDKRFQIFKDNLRFIDEHSALNRTYRLGLNRFADLTNEEYRARYLGTRIDPKRRLGRTPSNRYAPRVGDKLPDFVDWRKKGAVVPVKDQGGCGSCWAFSAIGAVEGINKIVTGDLISLSEQELVDCDTGYNMGCNGGLMDYAFEFIINNGGIDSEEDYPYRGVDGRCDQIRKNAKVVVIDGYEDVNAYDELALKKAVANQPVSVAVEGGGREFQLYSSGVFSGRCGTALDHGVVAVGYGTENGHDYWIVRNSWGDSWGEAGYIRLERNLANSRSGKCGIAVEPSYPVKSGPNPPNPGPSPPSPVKPPNVCDNYYSCSDSATCCCIFEFGNSCFEWGCCPLEGATCCDDHYSCCPHDYPICNTYAGTCLRSKNNPFGVKALRRTPAKPHGAFEGNKVSKA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02189 455 Gene3D Granulin 364 426 IPR037277 -
Spst8g02189 455 SMART pept_c1 127 343 IPR000668 GO:0006508|GO:0008234
Spst8g02189 455 SUPERFAMILY Granulin repeat 363 397 - -
Spst8g02189 455 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Spst8g02189 455 Gene3D Cysteine proteinases 19 345 - -
Spst8g02189 455 Pfam Granulin 377 424 IPR000118 -
Spst8g02189 455 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Spst8g02189 455 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Spst8g02189 455 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Spst8g02189 455 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Spst8g02189 455 SMART Inhibitor_I29_2 40 96 IPR013201 -
Spst8g02189 455 Pfam Cathepsin propeptide inhibitor domain (I29) 40 96 IPR013201 -
Spst8g02189 455 SMART GRAN_2 366 423 IPR000118 -
Spst8g02189 455 FunFam Cysteine protease 1 363 426 - -
Spst8g02189 455 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 337 IPR013128 GO:0008234
Spst8g02189 455 SUPERFAMILY Cysteine proteinases 31 343 IPR038765 -
Spst8g02189 455 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Spst8g02189 455 Pfam Papain family cysteine protease 127 343 IPR000668 GO:0006508|GO:0008234
Spst8g02189 455 CDD Peptidase_C1A 128 342 IPR039417 -
Spst8g02189 455 FunFam Cysteine protease 1 16 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02189 Spst-Chr8 31591597 31596068 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02189 8 31591597 31596068 Spst3g04055 3 91492051 91494099 ECH
Spst8g02189 8 31591597 31596068 Spst2g02563 2 25362310 25364440 ECH
Spst8g02189 8 31591597 31596068 Spst8g02189 8 31591597 31596068 ECH
Spst8g02189 8 31591597 31596068 Spst9g00489 9 4386677 4388814 PCT