Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02179 ATGGAAGATAGGGATCATTGTTGTTCCAACGATTCAACGATCACGAAGAGAAGAAGAAGAAGCAGAAGCCCGACAACAACCTCGGAGAAATCGAAGAAGCAACACCGCGAGAAACCTATGAAACCGTACCGAGGAATACGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCCAACAAAAGGTCCAGGATTTGGTTGGGTTCGTATACGACGCCCGTCGCCGCGGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGACCCTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGGGCTAATTATGACGATTCCGAGAACATGTCCGCTGATTCCATTCGCCGTAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCTCCACCACGCGCCCTCGCTCAACCCCTCTCCCATCTCCCTCAAACCCGACTTGAACGAGTTTCCAAAACTCGAAGACCTTCAAGATTGA 513 0.5478 MEDRDHCCSNDSTITKRRRRSRSPTTTSEKSKKQHREKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANYDDSENMSADSIRRKATQVGARVDALQTALLHHAPSLNPSPISLKPDLNEFPKLEDLQD 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02179 170 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Spst8g02179 170 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 MobiDBLite consensus disorder prediction 1 42 - -
Spst8g02179 170 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 Pfam AP2 domain 43 91 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 MobiDBLite consensus disorder prediction 1 36 - -
Spst8g02179 170 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Spst8g02179 170 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Spst8g02179 170 MobiDBLite consensus disorder prediction 148 170 - -
Spst8g02179 170 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Spst8g02179 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 23 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02179 Spst-Chr8 31331377 31331889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02179 41 141 AP2-EREBP Transcription Factor Family AT5G67190 75.248 5.42e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst8g02179 AP2 2.8e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02179 8 31331377 31331889 Spst8g02179 8 31331377 31331889 ECH