Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02176 ATGGCGCAGGTTCAGCATCATCAGAGTCCGGTGCCGGCTCCGCCTAACGGCGTCGCTCCGGCGCAGAATGCGAACCAGTTCGTGACGACGTCGTTGTATGTCGGTGATCTTGACCAGAATGTCAACGACTCGCAGCTCTACGATCTGTTCAACCAGGTCGGCCAAGTCGTTTCGGTTCGCGTCTGCAGGGACTTGACAACGCGTCGTTCACTCGGCTATGGCTATGTCAATTACAGTAACCCTCAGGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCACTGAACAACAAATCTATTAGGATCATGTATTCTCATCGGGATCCTAGTATTCGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGATCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACTGATGCTTCTGGCCTGTCTAAAGGCTATGGTTTTGTTCAATTTGACAATGAAGAGTCTGCACAGAATGCTATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGGCCTTTCCTCCGTAAACAAGATAGAGAGAATGCTCTCAATAAGACCAAATTCAATAATGTCTATGTGAAAAACCTTTCAGATTCAGCCACAGATGAGGAGTTAAAGAATGTATTTGGAGAATATGGTACCATTACTAGTGCTGTAGTAATGAGAGATGCAGATGGTAAGTCCAAGTGTTTTGGTTTCGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGACGGGCTTAATGGGAAGAAATTTGATGAGAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACTTGAATTGAAAGGACGATTTGAGCAGAGTATAAAGGAAGCTGCTGACAAATTTCAGGGTGTGAACTTGTACCTCAAGAACTTGGATGATACTATTAGTGATGAAAAACTTAAAGAAATGTTTTCTGAGTTTGGTACAATAACTTCATACAAGGTAATGCGAGACCCAAATGGAATTAGTAGAGGATCAGGATTTGTTGCATTTTCAACCCCTGAAGAAGCATCTCGTGCTCTTGCTGAAATGAATGGAAAAATGATTGCTGGAAAACCTCTGTACGTTGCCCTGGCACAAAGAAAAGAAGAGAGGAGAGCTAGGTTACAGGCACAATTTTCACAGATGAGGCCTGTTGCAATTACTCCTTCTGTTGCACCCCGTATGCCTCTCTACCCACCTGGTGCTCCTGGTATAGGACAACAATTTTTGTATGGGCAAGGCCCCCCAGCCATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTAGTTCCTGGAATGAGGCCTGGTGGCGGTCCAATGCCTAGCTTCTTTGTTCCTCTGGTTCAGCAGCAGGGACAACAAGGTCAGCGTCCAGGTGGCCGCCGTGGAGCAGGTCCTGTGCAACAACCGCAACAGCCAGTGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGAAGAGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCGCTGCCAGGTGTAGCTGGTGGAATGATGTCAGTTCCTTATGATATGGGAGGTCTGCCAATGCGTGATGCTGTGGGACAGCCAATGCCTATTCAAGCTCTGGCTACGGCCCTTGCAAATGCTCCACCTGAACAGCAGAGGACTATGCTGGGTGAAGCTTTATACCCGCTTGTGGATCAGCTGGAACATGACGCAGCAGCAAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTTCTACATCTGATCGAGTCACCAGATGCTCTGAAGGCAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCTCAACAGCAAACCAACCCTGCTGATCAACTAGCTTCGCTCTCGCTCAATGACAATCTTGTGCCTTAG 1953 0.467 MAQVQHHQSPVPAPPNGVAPAQNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGLSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGPFLRKQDRENALNKTKFNNVYVKNLSDSATDEELKNVFGEYGTITSAVVMRDADGKSKCFGFVNFENPDDAAKAVDGLNGKKFDEKEWYVGKAQKKSERELELKGRFEQSIKEAADKFQGVNLYLKNLDDTISDEKLKEMFSEFGTITSYKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGIGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQQGQQGQRPGGRRGAGPVQQPQQPVPMMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVPYDMGGLPMRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVP 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02176 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Spst8g02176 650 CDD RRM1_I_PABPs 31 110 IPR034364 -
Spst8g02176 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Spst8g02176 650 FunFam Polyadenylate-binding protein 295 400 - -
Spst8g02176 650 PANTHER RNA BINDING PROTEIN 29 92 - -
Spst8g02176 650 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 626 IPR006515 GO:0003723
Spst8g02176 650 SUPERFAMILY PABC (PABP) domain 495 641 IPR036053 GO:0003723
Spst8g02176 650 FunFam Polyadenylate-binding protein 199 294 - -
Spst8g02176 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Spst8g02176 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Spst8g02176 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Spst8g02176 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Spst8g02176 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Spst8g02176 650 Gene3D - 112 199 IPR012677 -
Spst8g02176 650 SMART poly_2 565 628 IPR002004 GO:0003723
Spst8g02176 650 CDD RRM4_I_PABPs 311 389 - -
Spst8g02176 650 FunFam Polyadenylate-binding protein 549 631 - -
Spst8g02176 650 SMART rrm2_1 313 385 IPR003954 GO:0003676
Spst8g02176 650 SMART rrm2_1 119 191 IPR003954 GO:0003676
Spst8g02176 650 SMART rrm2_1 31 104 IPR003954 GO:0003676
Spst8g02176 650 SMART rrm2_1 210 282 IPR003954 GO:0003676
Spst8g02176 650 MobiDBLite consensus disorder prediction 474 497 - -
Spst8g02176 650 CDD RRM2_I_PABPs 116 192 IPR045305 -
Spst8g02176 650 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Spst8g02176 650 Gene3D - 1 111 IPR012677 -
Spst8g02176 650 Gene3D - 200 297 IPR012677 -
Spst8g02176 650 Gene3D - 298 401 IPR012677 -
Spst8g02176 650 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Spst8g02176 650 SMART rrm1_1 313 385 IPR000504 GO:0003723
Spst8g02176 650 SMART rrm1_1 119 191 IPR000504 GO:0003723
Spst8g02176 650 SMART rrm1_1 210 282 IPR000504 GO:0003723
Spst8g02176 650 SMART rrm1_1 31 104 IPR000504 GO:0003723
Spst8g02176 650 MobiDBLite consensus disorder prediction 1 21 - -
Spst8g02176 650 FunFam Polyadenylate-binding protein 17 118 - -
Spst8g02176 650 FunFam Polyadenylate-binding protein 119 192 - -
Spst8g02176 650 CDD RRM3_I_PABPs 208 287 - -
Spst8g02176 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Spst8g02176 650 Gene3D - 549 632 - -
Spst8g02176 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Spst8g02176 650 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02176 Spst-Chr8 31184110 31188369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02176 1 645 Eukaryotic Initiation Factors Gene Family AT4G34110 68.445 0.0 870
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02176 8 31184110 31188369 Spst8g02176 8 31184110 31188369 ECH