Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02173 ATGCAAGGGCAGAGAGGTACACTTGGTTCCTTGCAAGAAACTATAGAATTTGATACATCAAGTGCTGCAACAGTTGATCAACATATTTTCTGGAATAATATGCGTAATCCTGCAGAAAATCATTTTGCACTTCCCCCCAGTGATTTGAACCCTTCATACCCGAATCCTATGAACCATGAATGGCAGAACCTCAGTGGATGGAGCTTAGGCGAGCCAAGTTCCAGTAATACTCAGAATGAGGTTACCAACAATGAGCAGAAGAGAGAGCTAGGTTTATCATCTTCCATAAGTTCTGGTTCTTTGGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACATTTTCATTGGACAACGTGAATACAACTCCGGTGTATATGCGCAGCTCCAATTCTCACTTGATGCCACATAATCTCAACCTAAATGCAAGTTTAGCAGATAGTGGCACTGATAATAGCTATCGAGTGGAACATCCTCCGAACTTGAACAAGTCTAGTGGGTCGGTAACTGAGCATATTCCACCTTCAATTGGTTCCGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTAGTTGAGGATACTGATAGTAGGCCAGGTTGTTCTCTAGATACCCGCCGAGTATCTTGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGGCAATCTTCGGGTGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTACTTGGAACACCCTTCCTACTCAGGATTATGGGGGGAGCAGTTTTAACAGATCTGCCTCGACTGAACAGGTAAGTGCGAGACTTGGCCTGAGTACAGGGGATGCAGCCTCTGAGAGCATTCCTGGGTCCAATGTTGCAGGAAGCTCAGAAATCTTCCACAGAAATTTTCGTCTCAGGATAAATCCTTCAAGTCAACAAATTTCCATTCCTCCCCCTGCAATCTCAAGTGGGAGTGTTATTAGGAATTCTGGTGTTTCTTCAGCCTCTCCAATGTTTCAACGATTCCATCCTGTTGATAATTCTTTGGAGTTGAGGTCAGCACCACCTGTTGATACTATGGTTCCTCAAAGCCAGCCCCTTGTAATTCATGTTCCAGCTTTACCGAGGAATGTGCAGCCATTCAGGTGGAATGGAGCTTCCAGCTCAACAAACAATCATCCATCAAACTCAGTTGTATGTGCCGATAGAAATAATTTACCAAACGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTGTAGAATACCCAATGTATGTGCCCGCAACCAATTTAAGAAATGTGGTTAGAAATCCAACTAGAGCTGCAAATAGTGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTCATCGAGGACAGGCTCAAATTCAGCTGTCAATCCGCCATCTGCCCCCGCATGGGTTTCTCGCCCTAATCCTCAGCAGTATCCTCGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAACAACAATTATGCTTCCTTCCGTGGTCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATAGTGAATTTGGAATTCAGTATTCTTTACGATCTTTGGCTGCTGGGGGTGAAGGAAGTAGTAGGCTTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTTGCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTTTGGAAGAACGCATTGGAAATGTGAGCACAGGCTTGAGTGAGGAGACCATTTTGAAACACTTGAAAAAGAAAAAGTATTCAGCTGAACCAGGTTCTCAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGCTTGTGGGCATGATTACCATACCGAATGTATCAAGCAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGCTTGGCGACATGA 2067 0.4427 MQGQRGTLGSLQETIEFDTSSAATVDQHIFWNNMRNPAENHFALPPSDLNPSYPNPMNHEWQNLSGWSLGEPSSSNTQNEVTNNEQKRELGLSSSISSGSLAGPRLEERRFEPNNTFSLDNVNTTPVYMRSSNSHLMPHNLNLNASLADSGTDNSYRVEHPPNLNKSSGSVTEHIPPSIGSGPFLLPSGTNGFLVEDTDSRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGSTWNTLPTQDYGGSSFNRSASTEQVSARLGLSTGDAASESIPGSNVAGSSEIFHRNFRLRINPSSQQISIPPPAISSGSVIRNSGVSSASPMFQRFHPVDNSLELRSAPPVDTMVPQSQPLVIHVPALPRNVQPFRWNGASSSTNNHPSNSVVCADRNNLPNEEASSRSMPRNIVEYPMYVPATNLRNVVRNPTRAANSANLSIPGNVGSSSRTGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSNNNYASFRGPSTSSGVNPFERQGDSEFGIQYSLRSLAAGGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHLKKKKYSAEPGSQHEAEPCCVCQEEYKDGDDLGSLACGHDYHTECIKQWLMHKNLCPICKTTGLAT 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02173 688 MobiDBLite consensus disorder prediction 437 474 - -
Spst8g02173 688 SUPERFAMILY RING/U-box 633 684 - -
Spst8g02173 688 MobiDBLite consensus disorder prediction 223 258 - -
Spst8g02173 688 SMART ring_2 641 681 IPR001841 -
Spst8g02173 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 685 IPR013083 -
Spst8g02173 688 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 209 686 IPR045191 GO:0061630
Spst8g02173 688 ProSiteProfiles Zinc finger RING-type profile. 641 682 IPR001841 -
Spst8g02173 688 MobiDBLite consensus disorder prediction 437 463 - -
Spst8g02173 688 MobiDBLite consensus disorder prediction 200 258 - -
Spst8g02173 688 MobiDBLite consensus disorder prediction 202 217 - -
Spst8g02173 688 MobiDBLite consensus disorder prediction 63 101 - -
Spst8g02173 688 FunFam E3 ubiquitin-protein ligase MBR2 609 686 - -
Spst8g02173 688 MobiDBLite consensus disorder prediction 63 106 - -
Spst8g02173 688 Pfam Ring finger domain 641 682 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02173 Spst-Chr8 31124458 31128048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02173 1 688 C3H Transcription Factor Family AT2G15530 33.826 1.04e-85 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02173 8 31124458 31128048 Spst8g02173 8 31124458 31128048 ECH
Spst8g02173 8 31124458 31128048 Spst9g00468 9 4103047 4109568 PCT