Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02172 ATGGGTGGTGACATGCACCAGCCACAACCCTCTCTTGGGAGAACCTTCCCTCCTAATTCAGAAGAGTTCTCAACCTTCTTCAACCAATTCCTCCACAACTCTCCCCCACTAGGAATGGACCCCAATCATTCTGCCTCTGATTTCATCCCTCACAACAACACCAACAACCCTGGTCCTTCCTCTTCCTCAAATTTCCATTTCCCGCACCCCCATCACTACATCCCTGCCACTGATGACAACACCTTCAAACAACACAACAATAATCACACCCCTGATTTCACTTCTTCTGTTGAGAAGAGTGTGGAGGCAACGAATCCTGTCCCACCACCACGTTCTTCATCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGAACTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAATAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATTGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGGTGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAATTAAGACCTACGATAATGGCTCAGACTGGGTTGAACCTTGATGAGAGTGACAGATTTCAGAATTCTACTAGTGCAATTGCGTCATCTTCGAATAAAGAAAACTTGGTGCGGCATGCTTTTAGTTTTCCAGAGCAATGCAGCATCTCAAATCAGTCTGTTGTTGTACCTTCAGTGACAAAATTAGCTAATTCGAATATCCCATCCGCTTTTCATCCTTCTGTTAAGGAAACACCCTACGACAACATGCCACAACTGTTTATGGATGCACCAAAGATTGGGAAAGACCCTTCTCCAGACGTGTCTTAA 876 0.4326 MGGDMHQPQPSLGRTFPPNSEEFSTFFNQFLHNSPPLGMDPNHSASDFIPHNNTNNPGPSSSSNFHFPHPHHYIPATDDNTFKQHNNNHTPDFTSSVEKSVEATNPVPPPRSSSKRSRAAEFHNLSEKRRRTRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGLSLHPMSLPGELRPTIMAQTGLNLDESDRFQNSTSAIASSSNKENLVRHAFSFPEQCSISNQSVVVPSVTKLANSNIPSAFHPSVKETPYDNMPQLFMDAPKIGKDPSPDVS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02172 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Spst8g02172 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 177 IPR036638 GO:0046983
Spst8g02172 291 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 268 IPR031066 -
Spst8g02172 291 FunFam Basic helix-loop-helix transcription factor 113 176 - -
Spst8g02172 291 SMART finulus 124 173 IPR011598 GO:0046983
Spst8g02172 291 Gene3D - 113 177 IPR036638 GO:0046983
Spst8g02172 291 MobiDBLite consensus disorder prediction 1 123 - -
Spst8g02172 291 MobiDBLite consensus disorder prediction 12 32 - -
Spst8g02172 291 MobiDBLite consensus disorder prediction 46 67 - -
Spst8g02172 291 MobiDBLite consensus disorder prediction 79 112 - -
Spst8g02172 291 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Spst8g02172 291 CDD bHLH_AtPIF_like 118 180 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02172 Spst-Chr8 31117219 31120313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02172 117 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 65.766 1.06e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g02172 HLH 5.1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02172 8 31117219 31120313 Spst8g02172 8 31117219 31120313 ECH