Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02167 ATGGCTCTTCTACTTGACAACTGTGAGAGGATTTTGCTCTCTTTGGACACACACAAATCCGTTCCTGCACCTTTCCTTACCAAGACGTACCAACTTGTGGACGATCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGACGACGCCACCTTCGTCGTTTGGAACCCCCCGGAGTTCGCCAGGGACCTTCTCCCCAACTACTTCAAACATAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAATGAGTTCTTCAAGAAAGGAGAGAAGCACTTGCTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCAGCATCAGCATCAAGTACAAGACATGAACTATCATAACCATCATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGCGTGTCCCCTCCCCGTGACTCGGACGATTTAGCCAATTGGTGTGACTCACCCCCAAGAGGACTTGCAATTGGAAACTGTATCAACAACAACAACAACTTCATCAGCACCAACAACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGGCTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCTGTGGCTCCAAGCAGCACTTACCCTTCTCTTCTACTATGCAGTAACAGCAACAACACATCACCAATACCCTCTCACATAAATAACGTTCCAACCGTTCAAAGACCGGTGAAGCAGTTTGTGGGGTGTTATTCCAACAACACTAAACAAGCGCGTGCTGCGAACTCTCCTACTAACAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGAGTCTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGCACGGATCTAACAATCTTCATAGTTCAGAAACAAATAAGGCACGTTTGGTAGTGGAAAATGATGAATTTTTTGGCTTGAATCTCATGCCCCCTTCAACTTGTTAG 1080 0.4676 MALLLDNCERILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWNPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHQQHQHQHQVQDMNYHNHHQFGLNVPPFFPFHNRLSVSPPRDSDDLANWCDSPPRGLAIGNCINNNNNFISTNNNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSSTYPSLLLCSNSNNTSPIPSHINNVPTVQRPVKQFVGCYSNNTKQARAANSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEHGSNNLHSSETNKARLVVENDEFFGLNLMPPSTC 359
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02167 359 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 FunFam Heat stress transcription factor B-4 17 115 - -
Spst8g02167 359 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 Gene3D - 17 116 IPR036388 -
Spst8g02167 359 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02167 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 284 IPR027725 -
Spst8g02167 359 Coils Coil 193 213 - -
Spst8g02167 359 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst8g02167 Spst-Chr8 31008328 31010001 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02167 1 358 HSF AT1G46264 54.593 5.72e-114 333
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst8g02167 HSF_DNA-bind 2.1e-32 CL0123
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02167 8 31008328 31010001 Spst8g02167 8 31008328 31010001 ECH
Spst8g02167 8 31008328 31010001 Spst9g00466 9 4084822 4086014 PCT