Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst8g02167 | ATGGCTCTTCTACTTGACAACTGTGAGAGGATTTTGCTCTCTTTGGACACACACAAATCCGTTCCTGCACCTTTCCTTACCAAGACGTACCAACTTGTGGACGATCCCTCCACCGACCACATAGTCTCTTGGGGCGAAGACGACGCCACCTTCGTCGTTTGGAACCCCCCGGAGTTCGCCAGGGACCTTCTCCCCAACTACTTCAAACATAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTCGCGAATGAGTTCTTCAAGAAAGGAGAGAAGCACTTGCTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCAGCATCAGCATCAAGTACAAGACATGAACTATCATAACCATCATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGCGTGTCCCCTCCCCGTGACTCGGACGATTTAGCCAATTGGTGTGACTCACCCCCAAGAGGACTTGCAATTGGAAACTGTATCAACAACAACAACAACTTCATCAGCACCAACAACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGGCTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCTGTGGCTCCAAGCAGCACTTACCCTTCTCTTCTACTATGCAGTAACAGCAACAACACATCACCAATACCCTCTCACATAAATAACGTTCCAACCGTTCAAAGACCGGTGAAGCAGTTTGTGGGGTGTTATTCCAACAACACTAAACAAGCGCGTGCTGCGAACTCTCCTACTAACAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAGCTGCAAGACCAAGCTTTTCGGAGTCTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGCACGGATCTAACAATCTTCATAGTTCAGAAACAAATAAGGCACGTTTGGTAGTGGAAAATGATGAATTTTTTGGCTTGAATCTCATGCCCCCTTCAACTTGTTAG | 1080 | 0.4676 | MALLLDNCERILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWNPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHQQHQHQHQVQDMNYHNHHQFGLNVPPFFPFHNRLSVSPPRDSDDLANWCDSPPRGLAIGNCINNNNNFISTNNNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSSTYPSLLLCSNSNNTSPIPSHINNVPTVQRPVKQFVGCYSNNTKQARAANSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEHGSNNLHSSETNKARLVVENDEFFGLNLMPPSTC | 359 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst8g02167 | 359 | Pfam | HSF-type DNA-binding | 25 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | SMART | hsfneu3 | 21 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | FunFam | Heat stress transcription factor B-4 | 17 | 115 | - | - | |
Spst8g02167 | 359 | PRINTS | Heat shock factor (HSF) domain signature | 25 | 48 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | PRINTS | Heat shock factor (HSF) domain signature | 63 | 75 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | PRINTS | Heat shock factor (HSF) domain signature | 76 | 88 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | Gene3D | - | 17 | 116 | IPR036388 | - | |
Spst8g02167 | 359 | ProSitePatterns | HSF-type DNA-binding domain signature. | 64 | 88 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g02167 | 359 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 18 | 284 | IPR027725 | - | |
Spst8g02167 | 359 | Coils | Coil | 193 | 213 | - | - | |
Spst8g02167 | 359 | SUPERFAMILY | "Winged helix" DNA-binding domain | 22 | 114 | IPR036390 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst8g02167 | Spst-Chr8 | 31008328 | 31010001 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst8g02167 | 1 | 358 | HSF | AT1G46264 | 54.593 | 5.72e-114 | 333 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Spst8g02167 | HSF_DNA-bind | 2.1e-32 | CL0123 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst8g02167 | 8 | 31008328 | 31010001 | Spst8g02167 | 8 | 31008328 | 31010001 | ECH | |
Spst8g02167 | 8 | 31008328 | 31010001 | Spst9g00466 | 9 | 4084822 | 4086014 | PCT |