Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02161 ATGTCTCAGTTTGGGTTCTTGTGGGTACTAATTCTAGTGCTGCTTCTTTGGGTGTGGTCAGAAGCTCTTGCTAATGCAAATGATTATGAGATAAAAGGGAGCAACAACAGAAACCAGTGCTCAACGTTGAAGTCGAAGAATGTTGTGAAGATTGGAGCAGCCATAGAGTTGAATTCTGGTGTGGGAAAGGAGGAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAAAGTTACCATCAACTCGCCTTGAACTTCAATCATAACATCCATGGGAATCCACCCTCTCCTTCTGTCTTGGCTGCGGATCTTGCAAACAGCAAACAAGTGCAAGTGGTTGTAGGAACAAAACTCGATGCAGCTACATTGTTCCACTCGATTGATGAAAACTCAAAGGATTTCCCCATCATATCTCTAACCTCGACAGCTAGTCCAGAGATGACTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGATGTCACCCTTCACATGCACTGCATTGCATCCATCGTACACCAATTCCATTGGCGAAAGGTCACAGCAATTTACGAACACAACAACCTCTTTGCCTCTCATTCAGAGATACTAACAAGACTCTCTCACTCTCTACGTCTAGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCATCGATGACACTTCTTTCAAACCCAACTGAGAGCATAGAACAAGAGCTTACAAGGCTCAAGAACAAGAGCAATAGGGTCTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTTTGCTATTTGAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGGTCATTGCAGATGACGTAGCTAACCACCTTGATTCATTCGATTCTTCTGTCACTTTCAACATGCAAGGTGTTATCGGGTGCAAAACCAACTTCATGGAGTTGAGTCAAACGTTCAAAAGTTTCAAGCTCATGTACAGGAGAAAGTTTGGATTGGAATACCCTGAAGAAGAAAACTCCCAACCAAGTGTCTTTGCTCTTAGGGCTTACGATGCTGTTTGGACCATTGCTAATGCTTTGGAGAACTCACAAGGAAACTTTTCATTATCAGAGAAGATTTTAAGTAGTGATCATGAGGGCCTTAGTGGAAAGATAAGGTTCAAAGGCAGAATGTTATTGGAACCGCCAACCTTTATGATTGTCAATGTTATTGGAAAAGGTTATAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAACCTTGTTGAGCATGAGGTGGTGAACACAACAGCAACTAGTGCTGGTTCTGCTAGAGTGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCACTGAGGGAAAGCCTTTGAAAATTGGGGTTCCAGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCAAGTTCACTGGTTTCTCTATCAATGTCTTTGAGACAGTCGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTCGATGCTGCTGTGGGAGACATCCAAGTGGTGGAACATAGATATGCATTTGCAGAATTCAGTCATCCATATGTTGAATCTGGTATTGCCATGGTTGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGTTAATGGCAGCAATGCATCTGTTCATAGCATTTGTAATATGGTTCATTGAAGGTGAAAACAATTCAGAGCTAAAGAGTTTAGGGGCCATTCTCTGGTTTTCTGTGACCACATTATTCTTTATACACAGAGAACCTGTAAATAGCAACTTGGCCAGAATAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACAGCGAGCCTTTCATCCTTGATGACAGTGTCCCATCTTGAACCATCTGTGCCTGATATACAAACACTGCTGAGGACAGATGCAATCATAGGGTGCAATAAGAACACCTTTTTGGTCCATTACTTAGTTGATGAACTCAGATTCCAGCCACAGAATATCAGGGTCTATGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGAGGCTTCTTTTACCATTGCCCCTCATGCTGATGTCTTCCTAGCTACGTATTGCCAGGGATACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTGGGCTTTGCATTCCCAAAAGGGTCAAGTTTAGCCATTGACATAACCCGAGCAACCTTAAAAGCCATAGAAAGTGGAGAAGTGCAAAAGCTAGAAGAGAAAATGTTGTCCACAACTAATTGTGGATCTACAAACAACAAAATGCAAAATGAAAAACTTGGTCCTCAACCTTTTTTTGGCTTATTTTGCATTTGTGGGGCCATTGCTCTGATAGGTTTATTGGCCACCATTATTCACTTTGTTAAGAGGAATGCACAAACATTTATGAATTACATACTATTGTCACAGATACAAAGAGGATTACAAATAATCAAACTCCTTGCTCAGTTCAATCTAAAGAAGAACACAAGGAGTGCACCAGTCCCAGATGCAAATTGTAGAGACAATGTATCTCATAACAATGACTTCCTACAATAG 2703 0.4151 MSQFGFLWVLILVLLLWVWSEALANANDYEIKGSNNRNQCSTLKSKNVVKIGAAIELNSGVGKEEKIAMEVAIEDVNRQSYHQLALNFNHNIHGNPPSPSVLAADLANSKQVQVVVGTKLDAATLFHSIDENSKDFPIISLTSTASPEMTSIPLPHFIQMGHDVTLHMHCIASIVHQFHWRKVTAIYEHNNLFASHSEILTRLSHSLRLVNAEIDHHVAFPSMTLLSNPTESIEQELTRLKNKSNRVFLLIQSSLEFATLLFEKAKQMGMMEKGSVWVIADDVANHLDSFDSSVTFNMQGVIGCKTNFMELSQTFKSFKLMYRRKFGLEYPEEENSQPSVFALRAYDAVWTIANALENSQGNFSLSEKILSSDHEGLSGKIRFKGRMLLEPPTFMIVNVIGKGYKELAYWSMESGLSENLVEHEVVNTTATSAGSARVLLSSVDWPGGLKTVPKGWVYNSTEGKPLKIGVPAVDPCPQFVNVSHDKRLNETKFTGFSINVFETVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARIVLAPWLFAILIVTQSFTASLSSLMTVSHLEPSVPDIQTLLRTDAIIGCNKNTFLVHYLVDELRFQPQNIRVYDSIHDFPRAFENKEIEASFTIAPHADVFLATYCQGYIKAGPTLKLGGLGFAFPKGSSLAIDITRATLKAIESGEVQKLEEKMLSTTNCGSTNNKMQNEKLGPQPFFGLFCICGAIALIGLLATIIHFVKRNAQTFMNYILLSQIQRGLQIIKLLAQFNLKKNTRSAPVPDANCRDNVSHNNDFLQ 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02161 900 Gene3D - 40 166 - -
Spst8g02161 900 Gene3D - 576 703 - -
Spst8g02161 900 Pfam Bacterial extracellular solute-binding proteins, family 3 490 797 IPR001638 -
Spst8g02161 900 SMART GluR_14 467 800 IPR001320 GO:0015276|GO:0016020
Spst8g02161 900 Pfam Receptor family ligand binding region 66 400 IPR001828 -
Spst8g02161 900 Pfam Ligand-gated ion channel 798 828 IPR001320 GO:0015276|GO:0016020
Spst8g02161 900 SUPERFAMILY Periplasmic binding protein-like II 445 796 - -
Spst8g02161 900 FunFam Glutamate receptor 167 336 - -
Spst8g02161 900 SUPERFAMILY Periplasmic binding protein-like I 46 456 IPR028082 -
Spst8g02161 900 CDD PBP1_GABAb_receptor_plant 50 420 IPR044440 -
Spst8g02161 900 Gene3D - 460 575 - -
Spst8g02161 900 PIRSF IGluLR_plant 356 895 IPR017103 -
Spst8g02161 900 PIRSF IGluLR_plant 3 367 IPR017103 -
Spst8g02161 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 860 IPR015683 -
Spst8g02161 900 Gene3D - 167 334 - -
Spst8g02161 900 CDD GluR_Plant 464 798 - -
Spst8g02161 900 FunFam Glutamate receptor 577 710 - -
Spst8g02161 900 MobiDBLite consensus disorder prediction 879 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02161 Spst-Chr8 30942679 30947375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02161 49 852 Ion Channels AT2G29120 30.260 1.38e-114 371