Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02121 ATGCATCAGTCGAATGGCTCCGATTCCTCGTTGCAGTCGCAGTCCACGGAGCAGAACGTGCCGCGGCAGCCGGCAGCGTCTCCGGCGGTGGCGCGGCCGCAGCAGTGGCTTCCGATGCAGTATCCGGCGGCCATGGTAATGCCGCATCACATGCTTCCGCCACAGCACTACGCAGCACAGCCGTACTTGCCTTTCCACCACCACCACCAGTACGCGCCGCCGCACGTCCCGCACCAGCACCAGAACGGATCCGGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATCTTCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTATGGATTTGTGGAGTTCTATTCACATGCTACAGCAGAGAAAGTTTTACAAAATTATGCTGGAATTTTGATGCCCAATACAGAGCAACCATTCCGACTGAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGACACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGCGATGACAATGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAACAGGGAGGCCAGTCAAATGGTACATCCAGCCAATCTGAAGTAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTTAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGATGTGGTTTTGTCCAATTCGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAACGGGACAACAATTGGAAAACAGACTGTCCGTCTTTCTTGGGGCCGTAACCCTGCAAATAAGCAGTTTCGAATGGATTTCGGCAACCCCTGGACTGGGGCATATTATGGGACACCTATTTATGATGGTTATGGATACGCATTGCCTCCTCGTCATGATCCGAGCATATATGCTGCTGCTTATGGGGCTTACCCCTTTTATGGAGCCCACCAACAACAAGTAAGCTGA 1254 0.4912 MHQSNGSDSSLQSQSTEQNVPRQPAASPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAAQPYLPFHHHHQYAPPHVPHQHQNGSGGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHDTFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEVDSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGTPIYDGYGYALPPRHDPSIYAAAYGAYPFYGAHQQQVS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02121 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 359 IPR000504 GO:0003723
Spst8g02121 417 FunFam Polyadenylate-binding protein RBP47C isoform A 88 168 - -
Spst8g02121 417 SMART rrm1_1 288 355 IPR000504 GO:0003723
Spst8g02121 417 SMART rrm1_1 183 257 IPR000504 GO:0003723
Spst8g02121 417 SMART rrm1_1 90 165 IPR000504 GO:0003723
Spst8g02121 417 MobiDBLite consensus disorder prediction 262 293 - -
Spst8g02121 417 Gene3D - 263 365 IPR012677 -
Spst8g02121 417 CDD RRM3_NGR1_NAM8_like 286 357 - -
Spst8g02121 417 MobiDBLite consensus disorder prediction 68 88 - -
Spst8g02121 417 MobiDBLite consensus disorder prediction 257 293 - -
Spst8g02121 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 363 - -
Spst8g02121 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Spst8g02121 417 FunFam Polyadenylate-binding protein RBP47C isoform A 181 257 - -
Spst8g02121 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 352 IPR000504 GO:0003723
Spst8g02121 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 253 IPR000504 GO:0003723
Spst8g02121 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 158 IPR000504 GO:0003723
Spst8g02121 417 MobiDBLite consensus disorder prediction 1 33 - -
Spst8g02121 417 CDD RRM2_SECp43_like 181 260 - -
Spst8g02121 417 SUPERFAMILY RNA-binding domain, RBD 50 169 IPR035979 GO:0003676
Spst8g02121 417 CDD RRM1_SECp43_like 90 170 - -
Spst8g02121 417 FunFam Polyadenylate-binding protein RBP47 272 389 - -
Spst8g02121 417 Gene3D - 181 257 IPR012677 -
Spst8g02121 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Spst8g02121 417 MobiDBLite consensus disorder prediction 1 23 - -
Spst8g02121 417 Gene3D - 88 168 IPR012677 -
Spst8g02121 417 SUPERFAMILY RNA-binding domain, RBD 181 360 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02121 Spst-Chr8 30018829 30022248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02121 77 367 Eukaryotic Initiation Factors Gene Family AT4G34110 28.188 3.21e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02121 8 30018829 30022248 Spst8g02121 8 30018829 30022248 ECH
Spst8g02121 8 30018829 30022248 Spst9g00439 9 3896803 3901544 PCT