Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02117 ATGTCGAATAGTAAGGACTCTCAAAGAATAAAAGGGCCATGGAGTGCGGAAGAGGACCGGGTTCTGACTGGGCTTGTAGAGGCCCATGGCCCTCGAAACTGGGCCCTCATAAGCCGACACGTAAAGGGCCGGTCTGGGAAGTCGTGCAGGCTTCGGTGGTGCAACCAGTTGAGTCCCGCTGTGCAGCACCAACCCTTCACCACGCGTGAGGACGCGATTATCCTGCACGCACACGCGCGGTTTGGGAACAAGTGGGCTACCATTGCGAGAATGCTTCCGGGCCGGACCGATAACGCCGTTAAGAACCACTGGAACGCCACGCTAAAGCGCAGGGCCTCCCAACGGCGTCGTGTTGGGGATAAACTAGAAAACGATCCATTGACCGCGTTGACTCTGGCTCCGCCGGGTAGTGGTGGCGCAGGAGTGGAGCGGCGCGGAGTTTCGACGGCGGGGTTTTGGGATGCGACGAGGGATGTGGTTGCGAGGGAAGTGAGTGAATACGTGTCTTCCTCGTTTTCCGACAACTTAGTCTCCAACGAAGAATTATCCAAATATTAA 558 0.5681 MSNSKDSQRIKGPWSAEEDRVLTGLVEAHGPRNWALISRHVKGRSGKSCRLRWCNQLSPAVQHQPFTTREDAIILHAHARFGNKWATIARMLPGRTDNAVKNHWNATLKRRASQRRRVGDKLENDPLTALTLAPPGSGGAGVERRGVSTAGFWDATRDVVAREVSEYVSSSFSDNLVSNEELSKY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02117 185 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Spst8g02117 185 CDD SANT 65 108 IPR001005 -
Spst8g02117 185 FunFam MYB transcription factor 11 62 - -
Spst8g02117 185 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Spst8g02117 185 Gene3D - 64 125 - -
Spst8g02117 185 MobiDBLite consensus disorder prediction 116 144 - -
Spst8g02117 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Spst8g02117 185 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Spst8g02117 185 Pfam Myb-like DNA-binding domain 64 105 IPR001005 -
Spst8g02117 185 CDD SANT 13 55 IPR001005 -
Spst8g02117 185 Gene3D - 10 62 - -
Spst8g02117 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Spst8g02117 185 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Spst8g02117 185 PANTHER MYB PROTEIN-RELATED 11 127 - -
Spst8g02117 185 SMART sant 62 110 IPR001005 -
Spst8g02117 185 SMART sant 10 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02117 Spst-Chr8 29874850 29876336 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g02117 Myb_DNA-binding 1.1e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02117 8 29874850 29876336 Spst8g02117 8 29874850 29876336 ECH