Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst8g02110 | ATGAAAAGTGTGTCGTCTGCGAATTGTAAATGGGATACCTCCACCCCTTCTCTTCCTAATTTAATTCCTTTAAGATTATTAGTTTGCTCAGCCCTTTGTATTAGTCCTGTAAGACCCTCAGCCACTATCAAGAATAAGAATGGGGCTAGTGGATCGCACTGCCTTAATCCCCTTCTCATTGGGAATTCGGTTGTGGGACAGCCGTTAGCCATAATGGAAATCATTGTTGATTCCAAGCATTCTCTTATCCATTTGGACCAAGTTTCCCCAAATCCTAGTCTCTTTTTGTTCCATACACTAAGGATTCCCCCTGATCTTCCCACTGATGGCTTAAAAGCCCATCCTATTTCCTCACTCCCCCACAGGGTTATATTTGGTGAAAGCGCTCCACGACCAGAGTTCATGCAAACGGAGCCTAGAATGTCGACGACGGAGGCTTTAACCGACGACGAGTCCACAATGCGAATTAGCAGCGCGGCGTCGCCGATGAGTCCTTATCACTACGAAAATGGAAGGCTGAGCGGCGAGGGTTCTCCGATGATGATGTCGCCGTGGAACCAGACCACGAATACGCCGTTTATGAAGGTGCAGTGGTCGCAGAGCGAAGACGGGAGCCTGCCGCAGAACGCACTCGTAGGTTCTCTTGTCCGAGAGGAGGGACACATATACTCGCTGGCGGCTTCGGGCGACCTCTTGTACACGGGGTCGGACAGCAAGAACATCCGCGTGTGGAAGAATTTGCAGGAGTATTCGGGGTTCAAATCCAACAGCGGATTGGTGAAAACCATAATTCTCTCGGGGCAGAAGATCTTCACCGGACACCAGGACGGGAAAATCCGCGTCTGGAAGGTTTCGCCCAAGAACCCGAGCGTGCACAAACGCGCCGGCACGTTGCCCACGCTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCGTTATGGATAAGGCATTCAGACGCCGTTTCGTGTTTGAGTCTCTCTGATAACAAGTTGTATCTGTACTCTGCGTCGTGGGACAGAACCATCAAGGTGTGGAGGATCGCAGACTCCAAGTGCCTTGAGTCCATCCACGCGCACGACGACGCCGTCAACGCGGTGGTGTGCGGCGAGGATGCGGTGATGTTTTCGGGCTCGGCGGACGGAACGGTGAAGATGTGGCAGCGGGAGGTACGGGGGAAGGGGCTGAAGCACGCGGCGGTGAAGACGCTCCTGAAGCAAGAGTGCGCGGTGACCGCGCTGGCAGTTGACGCGACAGCGTCGATGGTGTACTGTGGCGCCTCCGACGGGATGGTAAACTTCTGGGAGAGCGAGAAGGGCTACGCTCACGGCGGCGTCCTCAAGGGCCACAAGCTGGCCGTGCTTTGCCTCACCGCCGCGGGAGCGTTACTGTTCAGCGGCTCCGCCGACAAGACCATATGTGTGTGGAGAAGAGAAGGTACGATTCACACGTGCGTGTCGGTTCTCACGGGTCACGACGGTCCGGTGAAGTGCCTCGCCGTGGAGGAGGACCGCGAATCTGCTGCCAGCAGAGACCGGCGTTGGGTTTTGTACAGTGGCAGTTTGGACAAATCGGTTAAGGTTTGGAGCGTATCGGAATCGATGGACAATAATCAGTTGATGCACCAGCGCATGGCCTCTGATGCGGACTCGTTGCCCTCCGTCTCCGATAGTAGCCTATCTTTGGGCTGGGCCAATGGGAGAAACTGA | 1740 | 0.5454 | MKSVSSANCKWDTSTPSLPNLIPLRLLVCSALCISPVRPSATIKNKNGASGSHCLNPLLIGNSVVGQPLAIMEIIVDSKHSLIHLDQVSPNPSLFLFHTLRIPPDLPTDGLKAHPISSLPHRVIFGESAPRPEFMQTEPRMSTTEALTDDESTMRISSAASPMSPYHYENGRLSGEGSPMMMSPWNQTTNTPFMKVQWSQSEDGSLPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSDNKLYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEDAVMFSGSADGTVKMWQREVRGKGLKHAAVKTLLKQECAVTALAVDATASMVYCGASDGMVNFWESEKGYAHGGVLKGHKLAVLCLTAAGALLFSGSADKTICVWRREGTIHTCVSVLTGHDGPVKCLAVEEDRESAASRDRRWVLYSGSLDKSVKVWSVSESMDNNQLMHQRMASDADSLPSVSDSSLSLGWANGRN | 579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst8g02110 | 579 | MobiDBLite | consensus disorder prediction | 557 | 579 | - | - | |
| Spst8g02110 | 579 | SMART | WD40_4 | 208 | 245 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 318 | 357 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 407 | 446 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 450 | 487 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 492 | 540 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 246 | 283 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SMART | WD40_4 | 360 | 398 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | MobiDBLite | consensus disorder prediction | 138 | 179 | - | - | |
| Spst8g02110 | 579 | CDD | WD40 | 219 | 540 | - | - | |
| Spst8g02110 | 579 | MobiDBLite | consensus disorder prediction | 138 | 164 | - | - | |
| Spst8g02110 | 579 | Gene3D | - | 316 | 404 | IPR015943 | GO:0005515 | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 325 | 366 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 367 | 398 | - | - | |
| Spst8g02110 | 579 | PRINTS | G protein beta WD-40 repeat signature | 344 | 358 | IPR020472 | - | |
| Spst8g02110 | 579 | PRINTS | G protein beta WD-40 repeat signature | 527 | 541 | IPR020472 | - | |
| Spst8g02110 | 579 | PRINTS | G protein beta WD-40 repeat signature | 385 | 399 | IPR020472 | - | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 499 | 549 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 367 | 398 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 457 | 486 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 325 | 358 | - | - | |
| Spst8g02110 | 579 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 159 | 544 | IPR045182 | - | |
| Spst8g02110 | 579 | Pfam | WD domain, G-beta repeat | 494 | 540 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | Pfam | WD domain, G-beta repeat | 219 | 245 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | Pfam | WD domain, G-beta repeat | 455 | 486 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | Pfam | WD domain, G-beta repeat | 328 | 356 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | Pfam | WD domain, G-beta repeat | 362 | 397 | IPR001680 | GO:0005515 | |
| Spst8g02110 | 579 | SUPERFAMILY | WD40 repeat-like | 212 | 546 | IPR036322 | GO:0005515 | |
| Spst8g02110 | 579 | Gene3D | - | 405 | 571 | IPR015943 | GO:0005515 | |
| Spst8g02110 | 579 | FunFam | BnaA09g28200D protein | 315 | 402 | - | - | |
| Spst8g02110 | 579 | Gene3D | - | 185 | 315 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst8g02110 | Spst-Chr8 | 29474619 | 29481286 | Dispersed/Transposed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst9g01488 | 9 | 14981273 | 14986044 | Spst8g02110 | 8 | 29474619 | 29481286 | PCT |