Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02103 ATGGGGTGTGACTGTGGGGGGAAGTTAAATGCGAGAAAGCCTCAATTTTTTGAGATTTATTCCTCTGCCTTTAGCTCTCATAGACTGAAAATTCCAGATGGATTTGTGTGTCGCATGGAGGGAAGGACATACGGGTCATTTTCATTGACTGGTCCTAGTGGAAACGTATGGACAGTGCAATTATTCAAGCGGGACAATGATCTATTCTTCCATCATGGATGGTCAACATTTGTGGTGGATCATCGTCTAGAATCTGGTGACCTTTTAATTTTCAGATACGAAGGTCACTTGCATTTTACAGTGCAAGTATTTGATAAGGATGCATGTGAGAAGGAGGCAGCATTTTTTTCTGAGTGCAGTCAAAGTACGAGTGAATTTGCTGATATTATAGAACAGGAACGAGATATAAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTTCAAAGAAAATGAGATGTTGTAGAAATGAGAACCAGGAACTTCAACTGGCTGTTGTTGGTAAAGACCTATTGCTGAATGAGAGAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACCTCTAAAGTTTGTTTGGCTATTGATGCTCCTCTGCCTTTTAACATGGACAATAGAAACGAGGAGTCTGCCATCCTGCATAGAAGTGGAAAGGAAGATGATCCATATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCATTTACGTCCAATTTTCCATATTTTGTTAGAATCATGAAGAGCTTCAATGTCAGCGGTTCATATACTTTGAATATCCCATATCAGTTTTCAATGGCACACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTAAGAGGAGAACATTGGAGTGTTAATTCTGTGCCAACAACTAGAGTACATACTAGTCATACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGTAATAACATTAAGGTTGGAGATATCTGTATTTTTGAGCTTGTACATGAGGGTGAATTACGTGTTCACATTGCTGGAGTAGGAAAAGATGGGCTAGACTGCCAGGTTGGAAGAGTGACCATTAGTAAGCCTAGTGCAGGACATGCTGGAACTCCCAGATATATGCCAATGAATCCTAAAGTCAACTCAAAGTGCATAAGAAAAGTGGATCTATCAGATAAAAAATGGCCAAAGATTGGTCAAGAAACTGTGTTATCCATTGATCTAAAGAAATCTGGTAGAGCTTCGAGTACTTCTAAGAAGATGGGTCTTTGCCCTCAGTCCAAAGCTGCATATAAAAAGTTGGCTACTCCGAGGAGACATCGTGTAGAAGATGAACTAAGTTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCATTTAGTTCTCCTTTTCCTAATTTTGTTAAAATCATGAAAAAGTTCAATGTCAGTGGGTCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTTTACTTCGTAATTCAAGAGGTGAGTGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGACAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCTTGACCATCAAAATGAGCACTTAAAACTTTTAGCTAACGCTCCATCTACCTGCTAA 1791 0.3981 MGCDCGGKLNARKPQFFEIYSSAFSSHRLKIPDGFVCRMEGRTYGSFSLTGPSGNVWTVQLFKRDNDLFFHHGWSTFVVDHRLESGDLLIFRYEGHLHFTVQVFDKDACEKEAAFFSECSQSTSEFADIIEQERDIKESSSLDIAFDGVSKKMRCCRNENQELQLAVVGKDLLLNERVRPIRMFRETEETSKVCLAIDAPLPFNMDNRNEESAILHRSGKEDDPYFLGGVSLSNVSAQDEKKVAQSFTSNFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLRGEHWSVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHEGELRVHIAGVGKDGLDCQVGRVTISKPSAGHAGTPRYMPMNPKVNSKCIRKVDLSDKKWPKIGQETVLSIDLKKSGRASSTSKKMGLCPQSKAAYKKLATPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVLLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNEHLKLLANAPSTC 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02103 596 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Spst8g02103 596 SMART B3_2 16 107 IPR003340 GO:0003677
Spst8g02103 596 SMART B3_2 479 575 IPR003340 GO:0003677
Spst8g02103 596 SMART B3_2 254 352 IPR003340 GO:0003677
Spst8g02103 596 Gene3D - 8 109 IPR015300 -
Spst8g02103 596 SUPERFAMILY DNA-binding pseudobarrel domain 472 573 IPR015300 -
Spst8g02103 596 CDD B3_DNA 252 346 IPR003340 GO:0003677
Spst8g02103 596 Pfam B3 DNA binding domain 479 566 IPR003340 GO:0003677
Spst8g02103 596 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Spst8g02103 596 Pfam B3 DNA binding domain 18 106 IPR003340 GO:0003677
Spst8g02103 596 CDD B3_DNA 14 105 IPR003340 GO:0003677
Spst8g02103 596 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Spst8g02103 596 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Spst8g02103 596 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Spst8g02103 596 ProSiteProfiles B3 DNA-binding domain profile. 479 575 IPR003340 GO:0003677
Spst8g02103 596 CDD B3_DNA 477 571 IPR003340 GO:0003677
Spst8g02103 596 Gene3D - 464 574 IPR015300 -
Spst8g02103 596 Gene3D - 234 349 IPR015300 -
Spst8g02103 596 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 352 IPR044837 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst8g02103 B3 7.5e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02103 8 29314332 29317669 Spst8g02103 8 29314332 29317669 ECH