Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02082 ATGGATGTTGTGGATTTAGGTAGTATGATCAGCCGGCCACAAAAGCACAATAAGGTGTATGGTCTTGATAATCCTCAGTTGCAACTTGCAGTTTTGCAGAAAAATTTGCCTGCAGCCCATCTCATTTGGCAAGAGTATGTGAAAAACTATAGCACGAGTATCATTGCTTTGCGTAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTACAATCTGCATATAAAACTCTACAACAAATGGTGTCATTAGCCATCAGTGGAAACATTTCTATTACTAGAACAGATTATGGGAAGTTGTATTCTACTAGAGTGGATATTCCTGTTCCTTCAAATAAGGGGATAGGCTTAGCCACATTGGACTTGAAGGGCAAAAATAAATTGGACTCTTGTAAGAGTACTGAATTAGATGGACTCAATGGAGAAGAACACTCACTGCTTATGAAAGTGTTGAGGTGGTCCTTTAATGATATAATACATGGGTGTGCAAAGCAAAAGAATTATATGCTTGCAAGGCAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGCATTATTAAAGCAGTTATTTCCCATGGAAGTTTTGGGGATGCTTTAGGAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCAAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGCAAAGCACTACAATTAGATTTAGCTGAGGCTTTGCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCATGTGATGAATTGAATCAACCTGAACGTGCTGTGCGAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTGATATCAGGACTTTCGAGCTTCTATTTTCTTTATTTGGTGTTGTAAATGCCCCTTATGAAGAAAGTAATATACTGTCACAGGTGGATGCTTTTAAAAGAATAAATGCTATAGAAAAGGATATGGCCACAAATGGCATTTGGCACAGTCATCTTTCAATAAAAAACTTGTTGAGAGCCCTTGGAGAAGAAGGGATGATAAGAGAACTGATTCAGTATTTACATGTGGCAGAGAATCTTTTCATTTATAGAAACCCTTCATTGGGAACACGTATATACAACATAGTGTTACATTATCTTGTCGAAGCCAAAGAAAGCGACATGGCAATTGCAATTTTCAAGAAGATGAAGTTATGCGGCTGCAACCCTGACTCTGAAACATACAATATAATGATTGACTGTTGTACCATCGGAAAAAGTTACAGATCTGCTTGTTTGCTGATTTCAATGATGATACGGAATGGGTTTTGTCCAGGGATATGTACATATACTGCTTTCATTAAGATTTTGCTGCAAGATGAGAACTTTGATGAAGTCATGAATCTTTTGAAACAAGTCATATTGGATGGCATCCAACCTGATGTACTGCTGTTCAATACTGTTCTTAAAGAAGCATGTTACAAGGTAATTTACTTTTCATAG 1497 0.3707 MDVVDLGSMISRPQKHNKVYGLDNPQLQLAVLQKNLPAAHLIWQEYVKNYSTSIIALRRFIWSFTRLGDLQSAYKTLQQMVSLAISGNISITRTDYGKLYSTRVDIPVPSNKGIGLATLDLKGKNKLDSCKSTELDGLNGEEHSLLMKVLRWSFNDIIHGCAKQKNYMLARQLMLQMENLGLQPSCHTYNGIIKAVISHGSFGDALGVLKKMQQKNLKPNDSTLATLSITCSKALQLDLAEALLNQISECLYPHPYNALLASCDELNQPERAVRVFAKMKQKKVLPDIRTFELLFSLFGVVNAPYEESNILSQVDAFKRINAIEKDMATNGIWHSHLSIKNLLRALGEEGMIRELIQYLHVAENLFIYRNPSLGTRIYNIVLHYLVEAKESDMAIAIFKKMKLCGCNPDSETYNIMIDCCTIGKSYRSACLLISMMIRNGFCPGICTYTAFIKILLQDENFDEVMNLLKQVILDGIQPDVLLFNTVLKEACYKVIYFS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02082 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Spst8g02082 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Spst8g02082 498 Gene3D Tetratricopeptide repeat domain 378 494 IPR011990 GO:0005515
Spst8g02082 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Spst8g02082 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 377 410 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 446 480 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 187 220 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 412 444 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 256 288 IPR002885 -
Spst8g02082 498 NCBIfam pentatricopeptide repeat 153 186 IPR002885 -
Spst8g02082 498 Gene3D Tetratricopeptide repeat domain 147 253 IPR011990 GO:0005515
Spst8g02082 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Spst8g02082 498 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 493 - -
Spst8g02082 498 Pfam PPR repeat family 377 420 IPR002885 -
Spst8g02082 498 Pfam PPR repeat family 153 196 IPR002885 -
Spst8g02082 498 Gene3D Tetratricopeptide repeat domain 254 373 IPR011990 GO:0005515
Spst8g02082 498 Pfam Pentatricopeptide repeat domain 256 299 IPR002885 -
Spst8g02082 498 Pfam Pentatricopeptide repeat domain 435 488 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02082 8 28857908 28863879 Spst8g02082 8 28857908 28863879 ECH