Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02054 ATGACCCGTGAGAGCGAGATTTATAAATTAGAAATAGCAAAAATAAACACTGTGTTAGCAAAGTGTGTCCCAGCTGAAAATGACAATCTAGATTTTGGGTTGAGAATGACCCCAACAAGTGGTATTAGAATCGAAGCTGTACATGGAAAGGCTCATATCGAGAGGATGTACCTATGTGGAGGACTCACATTTGAGGGGACTCATATCTCATCGGTGTTGTCTATCTTGGATACCTCGGCTTCGGGAATGGATCAGATAAGTGAGGTGTATACAGATATTGTTGGAAATGCATATTACGTGGCTCCAGAGGTTTTGAAACGGAGTTATGGAAAGGAAATAGATGTTTGGAATGCAGGAGTCATTTTATACATACTCTTAAGTGGGGTGCCGCCATTTTGGGCTGAATCCGAGAAAGTCGAGTTTGTTGATATTTTGGGTGGTAAGTTAGATATGGACAGCCAGCCATGGCCTTCTATATCGGATGCTGCAAAAGATTTGATCAGAAAAATGCTTACTTATGACCGTAAGGAACGGATTACAGCTGCTGAGGCCCTTGAACATCCATGGTTGAAAGAAGATGGTGAAGCATCAGAAAAGCATCCAGACAGTGCTGTTTTAATGAGGATGAAACGGTTCAAAGCAATGAACCAGATGAAGAAACTAGCTTTGAAGGCAGTAGCAGAAAATCTTTCAGAGGAAGAAACAAAGGGCTTGAGACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACTATCACATTTGAAGAACTCAAATCTGGATTATCCAGATTGGGTTCCCAACTTGGTGAATCTGAAATAAGGCAGCTAATGAATGCTATTGATATTGACAAGACTGGAACTATTGACTACTGTGAATTTGTTGCTGCCACTATGGATCGGCATAAACTAGAAAAGGGGGGGAATTTGCTGAAGGCTTTTCAATACTTTGACATGGATGATAACGGTTATATAACGAAAGATGAACTTACGGAAGCAATCACTGGACACCAAATGGGAGATGAAGTCTTCGAAGATGTTGACTCAGACAAATTGTTAACGAACAACAGCCGTCTGGCAAGGGTAAAAATAGTAGGGGAGAAGCTTGTTTAG 1113 0.4106 MTRESEIYKLEIAKINTVLAKCVPAENDNLDFGLRMTPTSGIRIEAVHGKAHIERMYLCGGLTFEGTHISSVLSILDTSASGMDQISEVYTDIVGNAYYVAPEVLKRSYGKEIDVWNAGVILYILLSGVPPFWAESEKVEFVDILGGKLDMDSQPWPSISDAAKDLIRKMLTYDRKERITAAEALEHPWLKEDGEASEKHPDSAVLMRMKRFKAMNQMKKLALKAVAENLSEEETKGLRQMFNNMDTDGSGTITFEELKSGLSRLGSQLGESEIRQLMNAIDIDKTGTIDYCEFVAATMDRHKLEKGGNLLKAFQYFDMDDNGYITKDELTEAITGHQMGDEVFEDVDSDKLLTNNSRLARVKIVGEKLV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02054 370 Gene3D - 231 299 - -
Spst8g02054 370 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02054 370 Gene3D - 208 349 - -
Spst8g02054 370 ProSiteProfiles EF-hand calcium-binding domain profile. 269 304 IPR002048 GO:0005509
Spst8g02054 370 SUPERFAMILY EF-hand 229 346 IPR011992 -
Spst8g02054 370 ProSitePatterns EF-hand calcium-binding domain. 318 330 IPR018247 -
Spst8g02054 370 ProSiteProfiles EF-hand calcium-binding domain profile. 305 340 IPR002048 GO:0005509
Spst8g02054 370 SMART efh_1 237 265 IPR002048 GO:0005509
Spst8g02054 370 SMART efh_1 309 337 IPR002048 GO:0005509
Spst8g02054 370 SMART efh_1 273 301 IPR002048 GO:0005509
Spst8g02054 370 SMART serkin_6 8 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02054 370 Pfam EF hand 311 331 IPR002048 GO:0005509
Spst8g02054 370 Gene3D Transferase(Phosphotransferase) domain 1 51 195 - -
Spst8g02054 370 SUPERFAMILY Protein kinase-like (PK-like) 88 212 IPR011009 -
Spst8g02054 370 FunFam Calmodulin 1 227 355 - -
Spst8g02054 370 Pfam Protein kinase domain 88 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02054 370 CDD EFh 238 297 IPR002048 GO:0005509
Spst8g02054 370 ProSitePatterns EF-hand calcium-binding domain. 282 294 IPR018247 -
Spst8g02054 370 ProSitePatterns EF-hand calcium-binding domain. 246 258 IPR018247 -
Spst8g02054 370 Pfam EF-hand domain pair 238 298 IPR002048 GO:0005509
Spst8g02054 370 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 351 - -
Spst8g02054 370 ProSiteProfiles EF-hand calcium-binding domain profile. 233 268 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02054 Spst-Chr8 28375347 28379194 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Spst8g02054 Pkinase 2.9e-24 CL0016