Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02023 ATGGGAATTCTGAGCACAATAACAAGTTTTTTAGGATTTGGAGTGGGAACTTCAATTGGGCTAGTGATTGGATACTATTTATTCATATACTTTCAGCCAACTGATGTTAAGGATCCAATAATTCAACCCTTGGTTGAGCAAGATTCTAAAACTCTACAACAGTTGCTTCCAGAGATACCCTCTTGGATTAAAAACCCAGACTATGACCGTCTTGACTGGCTTAATAAATTCATTGAGTATATGTGGCCTTATCTGGACAAGGCAATTTGCAAAACTGCAAGGAGTATAGCAAAGCCAATTATTGCTGAGCAAATTCCAAAGTACAAAATTGATTCTGTTGAATTTGAAGAACTTAACTTGGGTTCTTTGCCACCAACTTTTCAAGGAATGAAAGTCTATACTACTGACGAAAAGGAGTTGATTATGGAACCATCAGTGAAGTGGGCTGGGAATCCTAATATTCTAGTTACAGTTAAAGCATTTGGGCTTCGAGCCACAGTCCAGGTTGTTGATCTGCAAGTATTTGCTTCTCCTCGTATAACTCTGAAGCCTTTGGTTCCAAGTTTTCCATGTTTTGCCAATATTTACGTGTCTCTCATGGAGAAGCCGCAAGTTGATTTTGGACTAAAACTTCTTGGAGCTGATGTAATGTCTATTCCTGGTCTTTATAGGATTGTCCAGGAAATCATTAAAGATCAAGTTGCAAAAATGTATCTATGGCCCAAGGCCTTAGAGGTTCAAATAATGGATCCAACAAAGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAAGTTGTAAGGGCAGAGAAGCTTAAAAAGAAAGACCTACTAGGGGCATCAGACCCTTATGTGAAACTCAAACTCACAGAAGAGAAACTTCCTTCAAAGAAAACAACTGTGAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTCAATATAGTTGTCAAAGATCCAGAATCTCAGGCTTTGGAGCTAACTGTTTATGACTGGGAGCAGATTGGCAAGCATGACAAGATGGGTATGAATGTCATTCCATTGAAAGAGATTACCCCTGATGAACCAAAAGTGATGACTCTTAATTTACTCAAGACCATGGACCCTAAAGATCCTGAGAATGAGAAGTCACGTGGACAGCTCACTGTAGAAGTTCTGTACAAACCTTTTAAGGAGGGAGAGTTACCTCCCAATGCAGAAGACCCCAATGCAATAGAAAAGGCTCCTGAAGGAACACCTTCTAGTGGTGGTTTACTTGTTGTTATTGTCCATGAAGCTGAAGATGTTGAAGGAAAACACCACACAAATCCGTTTGCACGGCTGCTATTTAAAGGAGAAGAGAGAAGAACCAAGCATGTAAAGAAAAATAGAGATCCAAGATGGGGTGAGTCGTTTCAATTTATGCTTGATGAACCCCCCACCAACGAGAGACTATATGTTGAAGTGCAAAGTGTCTCCTCAAGGATTGGCCTTCTGCATCCTAAGGAAAATTTGGGTTACGTGGATATAAAATTGTCTGATGTTGTAACCAACAAGAGAATCAACGAGAAATATCATCTTATTGACTCAAGAAATGGACGGATTCAAATTGAGCTTCAGTGGAGAACTCCATGA 1617 0.3964 MGILSTITSFLGFGVGTSIGLVIGYYLFIYFQPTDVKDPIIQPLVEQDSKTLQQLLPEIPSWIKNPDYDRLDWLNKFIEYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYTTDEKELIMEPSVKWAGNPNILVTVKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFANIYVSLMEKPQVDFGLKLLGADVMSIPGLYRIVQEIIKDQVAKMYLWPKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTTVKYKNLNPEWNEEFNIVVKDPESQALELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVMTLNLLKTMDPKDPENEKSRGQLTVEVLYKPFKEGELPPNAEDPNAIEKAPEGTPSSGGLLVVIVHEAEDVEGKHHTNPFARLLFKGEERRTKHVKKNRDPRWGESFQFMLDEPPTNERLYVEVQSVSSRIGLLHPKENLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRTP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02023 538 FunFam Synaptotagmin-2 isoform A 255 410 - -
Spst8g02023 538 Gene3D C2 domain 257 411 IPR035892 -
Spst8g02023 538 CDD C2 262 364 - -
Spst8g02023 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 9 535 IPR045050 GO:0008289
Spst8g02023 538 MobiDBLite consensus disorder prediction 393 413 - -
Spst8g02023 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Spst8g02023 538 Pfam C2 domain 419 521 IPR000008 -
Spst8g02023 538 Pfam C2 domain 260 361 IPR000008 -
Spst8g02023 538 CDD SMP_SYT 60 248 - -
Spst8g02023 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Spst8g02023 538 FunFam Extended synaptotagmin-2 419 537 - -
Spst8g02023 538 SMART C2_3c 261 361 IPR000008 -
Spst8g02023 538 SMART C2_3c 419 518 IPR000008 -
Spst8g02023 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Spst8g02023 538 Gene3D C2 domain 419 537 IPR035892 -
Spst8g02023 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Spst8g02023 538 PRINTS C2 domain signature 326 334 IPR000008 -
Spst8g02023 538 PRINTS C2 domain signature 304 317 IPR000008 -
Spst8g02023 538 PRINTS C2 domain signature 277 289 IPR000008 -
Spst8g02023 538 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Spst8g02023 538 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02023 Spst-Chr8 27804212 27809580 Dispersed/Transposed