Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01989 ATGATGGCTTCCGTAGAAGAAAAGATTAAAAATGGAGGAGTTGGAGCTGGAGGGGGAATGGTTGTTGGGGGTCAAACTCTGGTGGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCCGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTCTCATTACCTCAGGTTGGGAGCCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCGGCTTCTACTAGAAGAACAGCAACCTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAACGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAAAGAAGTCTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGCGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGCGGTTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATTTACAGAGGTCAACCAAAGAGACACCTTCTCACAACAGGGTGGAGTTTGTTTGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTTCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCCGCCGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGCCCTTCAGAATTTGTTATTCCACTGCCTAAATACAGAAAAGCTGTATTAGGAACTCAGGTCTCAGTTGGCATGAGGTTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGAGAAGATATATGGGTACAATAGTTGGTATTAGTGATGTGGATCCTCTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATTTTTCCTTCATTGACTTCAAGTCTAAAACGGCCATTACAATCTGGTTTCTATGAAAACGAGTGGGGAACTTTGTTAAGAAGACCTTTTATGAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACTCAATGCCAAATCTCTACTCAGAGCACATGATGAAAATGCTTTTCAAACCCCAGATTATTAACAACAACGGAGCAATGTTATCCGCCATGCAACAAGAATCTGCTCCTGCAAGAGGTCCCTTTCAAGAGATGAAGACCACACTTGCACCAGAGAACATGCCGCTTAGAAATCTACACACTCAATGTATGCCCGACCAAACTAATCGCTTAAACATGCAATCATTGTTGAAAAGTGATCAACCTGACAAGTTGCATACTCTTGCCAAAATTGATAATCATCTGCCTTCTGGGATAGTAACTGACAAGCCAAAATTAGAACCTGAGGTATTACCTGATCATATGATTGACTACCCTTCCATGGAAGGTTGCAACATTGAAAAGGTGGCAGCAAATCCTGTTAACCAGCAAGGCCTAGCAAACGAATTGACATTCCATGCTCAAAATCAGACTCCTCTACTCACTCACTCTAGTCCATGGCCTATGCAACCTCAGCTAGAATCATCCATACCCCAACAGCAAATGATTGACATGTCTCAAACTGAAACTGCGATGGTAAATAGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCATATGCTTCTTCCCAACCCTTTGCTGTGCCAAACAGACCAACTGGACCTTTATCTGACTTGCAAGAACATACCTCACTTCAACCTCAAGTAGTGAATCCCCCTTTGCCTTCAATGAACCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAATTTTTGTCTCAAACAGACCAGCTAACTTCCATATGTCAGCCAGGGACTTTTGGCCTCAATGGCATGTCAAGTTCAAGCAGTTTGAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAACAGTGTAGGTACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGAGAGAGAGTTTCAGAATCCAAACGATTGCTTGGTGGGCAACTTGAGTTCGAGCCAAGACGTGCAGTCTCAGATAACCTCAGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTCAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAGAGCAGCTTTCTACAGCATAACTCATGGCAGAAAGTACCTGCTCCGATCCGAAGCTACACAAAGGTGCAAAAGGCCGGTTCTGTAGGAAGATCAATTGATGTCAATACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGTATGTTTGGACTTGATGGTCTGCTAAATGACACTAAAGGAGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAGTTTGTGGGCTGTGTCCGCTGCATCCGAATTTTGTCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTTAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA 2805 0.4389 MMASVEEKIKNGGVGAGGGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLPKYRKAVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFYENEWGTLLRRPFMRVPENGTMELSNSMPNLYSEHMMKMLFKPQIINNNGAMLSAMQQESAPARGPFQEMKTTLAPENMPLRNLHTQCMPDQTNRLNMQSLLKSDQPDKLHTLAKIDNHLPSGIVTDKPKLEPEVLPDHMIDYPSMEGCNIEKVAANPVNQQGLANELTFHAQNQTPLLTHSSPWPMQPQLESSIPQQQMIDMSQTETAMVNSLLPQLDIDEWMAYASSQPFAVPNRPTGPLSDLQEHTSLQPQVVNPPLPSMNHEVWDHYVKSLKFLSQTDQLTSICQPGTFGLNGMSSSSSLRDLSAESNNQSEICVNVDVSNNSVGTTMVDPSTSSTILDEFCTMKEREFQNPNDCLVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQHNSWQKVPAPIRSYTKVQKAGSVGRSIDVNTFKNYEELIRAIECMFGLDGLLNDTKGGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01989 934 Gene3D - 317 389 - -
Spst8g01989 934 SUPERFAMILY DNA-binding pseudobarrel domain 141 282 IPR015300 -
Spst8g01989 934 Pfam AUX/IAA family 868 915 IPR033389 -
Spst8g01989 934 ProSiteProfiles PB1 domain profile. 829 912 IPR000270 GO:0005515
Spst8g01989 934 Gene3D - 826 917 - -
Spst8g01989 934 CDD B3_DNA 152 253 IPR003340 GO:0003677
Spst8g01989 934 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Spst8g01989 934 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Spst8g01989 934 FunFam Auxin response factor 317 389 - -
Spst8g01989 934 SUPERFAMILY CAD & PB1 domains 829 907 - -
Spst8g01989 934 FunFam Auxin response factor 825 917 - -
Spst8g01989 934 SMART B3_2 153 255 IPR003340 GO:0003677
Spst8g01989 934 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 918 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst8g01989 934 FunFam Auxin response factor 151 255 - -
Spst8g01989 934 Gene3D - 151 254 IPR015300 -
Spst8g01989 934 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01989 Spst-Chr8 27050065 27054625 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst8g01989 B3 2.5e-20 CL0405