Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst8g01987 | ATGGCGGTAGATAATCCTGAGGATGGATTGAAGAAGCTGGAATACCTGTCGCTAGTGTCGAAGGTGTGCACCGAGTTGGAGTCCCACACCGGCACCGGCGACAAGGTTCTCGCGGAGTTCATCACTGAGTTGGGTCGATCATCGGAGAATGTTGAGGAATTTGACGCGAAACTGAAGGAGAATGGTGCGGAGATGCCGGATTACTTTGTCCGAACGCTCCTCACTATTATTCACGCGATTCTCCCTCCCAAGCCGAAGGATTTGAAGAAGGAGAAAGAGAGTGGCAACGGCAAGACCAAGTTCAAGGCTCTGGCCATTGCAGACGATAGAGACCGAGCCAAGGAGCTTCGGATGGAGATAGAATCTGAGGCCAGGGAGAAGCAGAGTGAGCAAATTGAGAAAGATGATGGTTACAGAGATAGAGATAGAAGAGATAGGCGCAGAGATAGGTATGATGAAGATGATAGAAGGGATCACCACAGAAGAGGAAGAGACAGAGATGACGAAGATGATAGAAGGGATTACAGCAGAAGAGGTAGAGATAGAGATAATGAAGATGATAGAAGGGATTACAGCAGAAGAGGAAGAGATAGATATGATAAGGATAGAGATAGAGATAGAGATGGTGATAGGCATGAGAGGCGCAGGAGAGATGATTATGAAGAGGATGGGCGTGGAAGGGAGAATGGGGATAAAGATGGCAACAGGAAGGGTACACGGCATGCTTCTGGTGAACCTGAATTATATGCCGTTTATAAAGGGAGGGTGTCTCGTGTAATGGAGACTGGATGCTTTGTCCAGTTGGAAGACATAAGAGGGAAGGAGGGGTTGGTCCATGTGTCACAGATGGCCACTCGGAGGATCACAAATGCCAAAGACGTGATTAAGAGAGACCAGGAGGTTTATGTAAAGGTGATCTCAGTTTCGGGTCAGAAGTTGTCGCTTTCCATGAGGGACGTTGATCAGCACACTGGTAAGGATCTCCTTCCATTGAAGAAGAGCTCCGAGGATGATGCCTTGAGGATGAATCCGCAGGGTTCAAGGGATGGGCCGGTTGCCAGGACAGGGCTTTCAGGTATCAGGATTGTAGAAGAAGATGATGTTGGTTCTTCGCGGAGACCTCTGAAGAGAATGAGCTCTCCGGAGAAATGGGAAGCAAAACAGTTGATTGCTTCAGGTGTCATGAGTGTTTCAGAGTATCCAACCTATGATGAGGAGGGAGATGGATTGTTGTACCAAGAGGAAGGTGCCGAAGAGGAGCTTGAAATTGAGATGAATGAGGATGAACCCGCATTCTTGCAAGGGCAGAGCAGATACTCAATGGATATGTCTCCTGTTAAAATTTTTAAGAATCCTGAAGGTTCTCTGGGTCGAGCGGCTGCACTCCAGTCTGCACTTATAAAGGAGCGGAGGGAAGTGCGGGAACAACAACAACGGACAATGCTTGATTCAATTCCAAAGGATCTCAATCGGCCTTGGGAAGACCCTATGCCAGAGTCTGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCCTATGATATGCCAGAATGGAAGAAGGACGCATATGGGAAAACCATTACCTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTTTTGGTAGTTATTGGAGAAACTGGTTCAGGTAAGACTACTCAGGTCACACAGTATCTTGCCGAAGCGGGTTATACCACAAAAGGAAAAATTGGATGTACTCAACCACGTAGGGTGGCTGCAATGTCAGTTGCGAAGAGAGTTGCAGAAGAGTTTGGTTGTAGATTGGGAGAAGAAGTTGGTTATGCTATTCGGTTTGAGGATTGCACTGGACCAGATACTGTTATCAAGTACATGACAGATGGTATGCTTCTTAGAGAAATATTGGTCGATGAGAATCTGTCACAATATTCTGTTATAATGCTTGATGAAGCCCATGAAAGGACTATTCATACTGATGTTCTATTTGGACTGCTGAAGCAGCTAGTGAAGCGAAGACCTGAATTGCGATTGATTGTCACCTCTGCTACTCTGGACGCCGAGAAATTTTCAGGATATTTCTTTAACTGTAACATCTTTACAATTCCTGGTAGAACTTTTCCTGTAGAGATACTTTATACTAAACAACCTGAAAGTGATTACTTAGATGCAGCTTTAATAACGGTCCTACAGATCCACTTGACAGAGCCGGAGGGAGACATTCTTCTCTTCTTGACTGGGCAAGAGGAGATTGATTTTGCTTGCCAATCTCTATATGAGAGAATGAAAGGATTAGGCAAGAATGTTCCAGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTAATTGATCCTGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTGATCACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGAACCGGACCTGGGAAGTGTTATCGCCTTTATACTGAGAGTGCATATAGGAATGAGATGTCTCCCACTACAATTCCTGAGATTCAAAGGATAAATCTCGGGACGACTACACTAAATATGAAAGCTATGGGGATAAATGATCTACTGTCCTTTGATTTTATGGATCCACCATCACCCCAAGCATTGATTTCTGCCATGGAGCAGCTCTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTGACCAAATTGGGGAGGAAAATGGCCGAATTTCCTTTGGATCCACCTTTGTCCAAGATGTTGCTTGCCAGTGTGGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACTGGAAATATTTTTTACAGGCCAAGGGAAAAACAAGCCCAAGCAGATCAGAAGAGAGCAAAGTTTTTCCAGCCAGAGGGTGATCATCTTACACTACTTGCTGTTTACGAGGCTTGGAAAGCCAAGAATTTTTCTGGGCCCTGGTGTTTTGAGAATTTTGTGCAATCCAGATCATTGAGAAGAGCACAGGATGTCAGGAAACAACTTCTCACCATAATGGATAAGTACAAATTAGATGTTGTAAGTGCTGGAAAAAATTTCACCAAAGTAAGGAAGGCTATCACTGCTGGATTCTTTTTTCATGCTTCTAGAAAGGATCCCCAGGAAGGGTACAGAACCCTTGTTGAGAACCAACCCGTGTATATCCATCCTAGTTCTGCTTTGTTCCAGAGGCAGCCAGATTGGGTCATCTACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACCGTCATAGACCCCAAATGGCTTGTTGAATTGGCTCCAAGATTTTTCAAAGTAGCAGATCCTACAAAGATGAGCAAACGGAAGCGTCAAGAGCGTATTGAACCACTTTATGATAGATACCATGAGCCAAATTCATGGCGATTGAGCAAACGCCGTGCTTGA | 3606 | 0.4481 | MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKESGNGKTKFKALAIADDRDRAKELRMEIESEAREKQSEQIEKDDGYRDRDRRDRRRDRYDEDDRRDHHRRGRDRDDEDDRRDYSRRGRDRDNEDDRRDYSRRGRDRYDKDRDRDRDGDRHERRRRDDYEEDGRGRENGDKDGNRKGTRHASGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHVSQMATRRITNAKDVIKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQGSRDGPVARTGLSGIRIVEEDDVGSSRRPLKRMSSPEKWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGTTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKVRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA | 1201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst8g01987 | 1201 | SMART | helicmild6 | 774 | 878 | IPR001650 | - | |
| Spst8g01987 | 1201 | SMART | ultradead3 | 546 | 730 | IPR014001 | - | |
| Spst8g01987 | 1201 | Pfam | DEAD/DEAH box helicase | 554 | 704 | IPR011545 | GO:0003676|GO:0005524 | |
| Spst8g01987 | 1201 | CDD | SF2_C_RHA | 725 | 886 | - | - | |
| Spst8g01987 | 1201 | SMART | ha2_5 | 939 | 1029 | IPR007502 | GO:0004386 | |
| Spst8g01987 | 1201 | MobiDBLite | consensus disorder prediction | 86 | 105 | - | - | |
| Spst8g01987 | 1201 | MobiDBLite | consensus disorder prediction | 122 | 242 | - | - | |
| Spst8g01987 | 1201 | Gene3D | - | 923 | 1022 | - | - | |
| Spst8g01987 | 1201 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 558 | 721 | IPR014001 | - | |
| Spst8g01987 | 1201 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 663 | 672 | IPR002464 | - | |
| Spst8g01987 | 1201 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 724 | 898 | - | - | |
| Spst8g01987 | 1201 | FunFam | ATP-dependent RNA helicase DHX8 | 244 | 329 | - | - | |
| Spst8g01987 | 1201 | PANTHER | ATP-DEPENDENT RNA HELICASE | 479 | 1163 | - | - | |
| Spst8g01987 | 1201 | Coils | Coil | 459 | 479 | - | - | |
| Spst8g01987 | 1201 | Gene3D | - | 724 | 898 | IPR027417 | - | |
| Spst8g01987 | 1201 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 514 | 723 | - | - | |
| Spst8g01987 | 1201 | CDD | GH2-like_DHX8 | 13 | 80 | - | - | |
| Spst8g01987 | 1201 | Gene3D | - | 520 | 723 | IPR027417 | - | |
| Spst8g01987 | 1201 | Pfam | Helicase associated domain (HA2) | 940 | 1028 | IPR007502 | GO:0004386 | |
| Spst8g01987 | 1201 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1086 | 1161 | IPR011709 | - | |
| Spst8g01987 | 1201 | SUPERFAMILY | Nucleic acid-binding proteins | 249 | 325 | IPR012340 | - | |
| Spst8g01987 | 1201 | Gene3D | - | 244 | 329 | IPR012340 | - | |
| Spst8g01987 | 1201 | Pfam | S1 RNA binding domain | 249 | 316 | IPR003029 | GO:0003676 | |
| Spst8g01987 | 1201 | MobiDBLite | consensus disorder prediction | 334 | 354 | - | - | |
| Spst8g01987 | 1201 | SMART | S1_6 | 247 | 318 | IPR022967 | - | |
| Spst8g01987 | 1201 | ProSiteProfiles | S1 domain profile. | 249 | 318 | IPR003029 | GO:0003676 | |
| Spst8g01987 | 1201 | Coils | Coil | 106 | 133 | - | - | |
| Spst8g01987 | 1201 | CDD | DEXHc_DHX8 | 543 | 721 | IPR044762 | GO:0000398|GO:0003724|GO:0005524 | |
| Spst8g01987 | 1201 | Pfam | Helicase conserved C-terminal domain | 746 | 878 | IPR001650 | - | |
| Spst8g01987 | 1201 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 739 | 919 | IPR001650 | - | |
| Spst8g01987 | 1201 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 538 | 1072 | IPR027417 | - | |
| Spst8g01987 | 1201 | CDD | S1_DHX8_helicase | 249 | 325 | - | - | |
| Spst8g01987 | 1201 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 923 | 1022 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst8g01987 | Spst-Chr8 | 27029826 | 27033772 | Dispersed/Transposed |