Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01985 ATGGAAGGTGCTGATCAAAGTAATATGAATCGAAATGGTTGCGTATTTGGTTCATCATCAGGAGCAAATCTCAGACCCCCAAATCGATTGAATAATGCTGTGCCTATTAGTCAAATGGGTCTGGCTGAGAATCAGAAACCCTATGGTATACCACCCTCACACCCTAATTCAAATATTTCACCTTCTTCACCCTATCCTCAGTATTTTGCTTCCCAATCCCATTCCAATTCGGTTGCCCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGCTTCATCGCATTCTAGGTCTTTGTCTCAATCCTCTTTTTTCTCTCTGGATTCTTTGCCCCCATTGAGTCCTTCCCCTTATAGAGAGCCCACCCTTTCTGACCCAATTTCAACAGATATGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCTCCTGTGCCTAATCGTGGCCCTGCTCTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGTGATTCCCCCTTAGGAATCTCTGATTATATTCAGTCTGCCCCTCAGTTGATTCCCTCCAGGACTTGGAGTGATCGAGATGGTTCGGCTTCTAGGGGAGGGAACTCAGGTTATGAGAAACCGATTCAGTTAGTGTTAAAGGAACCGATTAAGGATGTGGACCGTGCTGATGGTTTTGGTGGGGAACCTATGATTGGAAGGAAAGAGGATGATGCACTGGACGATTTATTTAGTGCATATATGAATTTGGACAACATTGATGGTCTGAATTTTTCTGGTATGGAAGATAAGGATTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGATAATGAAGTTGAGAGTCATGCAAATGGGAAAACAACTGGTGGTCAAGGGGCTAGTTCAAGCTGTTCCGAGGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGACATTGCACCTGGTTCCCGACACAGGAGAAGTTTCTCATTGGACAGCTCCATTGGAAATTTTAATATTGGAGATGAATCACCTAAGCTTCCTCCTTTGCAAAACCGAGTTGGTCAACACTCCCCTAGCAATTCAATTGATGGTAAGACATCTGATACAAGCATGGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGATTTTGGCTAATCGCCTATCTGCTGCTCGCTCAAAAGAGCGGAAGATGCGGTACATTTCTGAATTGGAGCTGAAAGTCCAAACGCTTCAGACAGAGACAACAACATTGTCTACTCAGTTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACCTTGGATGCTGAAGTTCGGCGTTTAAGACGCACGGTTGCAGAACTTGGCGGGGAGTCCCTCCTCTCGAGTCGCATGGCTCAACAGCTTGCTATCGGCCAACAAATGTTCCCGATGCAGCACCAGCAGCACCCTAACCAGCATAGACATGTTCAACTGCATAACAGCCATTCCCAGGAGCAGACCCAGACTCAGTCACAGCGTCAGAATGGCAAAGCTACAGCCTACTGA 1665 0.4541 MEGADQSNMNRNGCVFGSSSGANLRPPNRLNNAVPISQMGLAENQKPYGIPPSHPNSNISPSSPYPQYFASQSHSNSVAQRLGSPNLSSASSHSRSLSQSSFFSLDSLPPLSPSPYREPTLSDPISTDMSAEESLVNPHAPVPNRGPALQLGHSLPPRKGHRRSSSDSPLGISDYIQSAPQLIPSRTWSDRDGSASRGGNSGYEKPIQLVLKEPIKDVDRADGFGGEPMIGRKEDDALDDLFSAYMNLDNIDGLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTGGQGASSSCSEERREGVKRSSNGDIAPGSRHRRSFSLDSSIGNFNIGDESPKLPPLQNRVGQHSPSNSIDGKTSDTSMEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSRMAQQLAIGQQMFPMQHQQHPNQHRHVQLHNSHSQEQTQTQSQRQNGKATAY 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01985 554 MobiDBLite consensus disorder prediction 534 554 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 1 207 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 283 300 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 347 373 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 50 108 - -
Spst8g01985 554 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 84 548 - -
Spst8g01985 554 SMART brlzneu 394 458 IPR004827 GO:0003700|GO:0006355
Spst8g01985 554 MobiDBLite consensus disorder prediction 1 39 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 262 375 - -
Spst8g01985 554 Gene3D - 397 463 - -
Spst8g01985 554 Coils Coil 414 434 - -
Spst8g01985 554 MobiDBLite consensus disorder prediction 517 554 - -
Spst8g01985 554 Coils Coil 442 497 - -
Spst8g01985 554 SUPERFAMILY Leucine zipper domain 398 453 IPR046347 GO:0003700|GO:0006355
Spst8g01985 554 CDD bZIP_plant_RF2 399 471 IPR044759 GO:0003700|GO:0006355
Spst8g01985 554 MobiDBLite consensus disorder prediction 166 196 - -
Spst8g01985 554 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 396 459 IPR004827 GO:0003700|GO:0006355
Spst8g01985 554 Pfam bZIP transcription factor 398 456 IPR004827 GO:0003700|GO:0006355
Spst8g01985 554 MobiDBLite consensus disorder prediction 119 133 - -
Spst8g01985 554 FunFam Transcription factor VIP1 isoform A 396 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01985 Spst-Chr8 26919246 26921983 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst8g01985 bZIP_1 1.9e-10 CL0018