Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01973 ATGAAGATCCAATGTGACGTGTGTAACAAACACGACGCATCGGTCTTCTGCACCGCCGATGAAGCAGCCCTCTGCGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTCGCCTCCAAACACCAACGTTTCTCTCTTCTTCGACCTAAACAACACCCTCTCTGCGATATTTGTCAGGAGAGAAGAGCTTTCACGTTCTGTCAGCAAGACAGAGCGATTCTGTGCAGAGAGTGTGACGTGTCGATTCACTCTGTAAACGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCAACTTCTTCTTCGTCACAAGAAACTGCCTCTCCTTCATACTCAACCCCTGATTCTCTTCTGGACGTTACGCATCAAACAACAATACCTTTATCTTCCACCATGAATAAGGTTGGTGTTGAAGCAACGGGTTCCACAAGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTGTAAGAGTGACGAGGTGTTGCCACGGTTTGATGTTGACGTGGAGGGGCATCTCGGTTCCTTCTCAACGGAGAACATGGGGATCTGGGTTCCTCAAGCGCCACAACCTCTTCTGAGTTCTTCCCAGATGGATGGAGCGATTGGGCAAAGTGAGACCAATATGAAAGGTAGCAAATTGAGGTTGAAGGATGATAATTTCACAGTGCCACAGATGAGTCCTCAGTCAAATCCCAAGAGAGGAGGGAGGTTTCAATGGTAG 798 0.4799 MKIQCDVCNKHDASVFCTADEAALCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDICQERRAFTFCQQDRAILCRECDVSIHSVNEHTLKHDRFLLTGVKLSTSSSSQETASPSYSTPDSLLDVTHQTTIPLSSTMNKVGVEATGSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFCKSDEVLPRFDVDVEGHLGSFSTENMGIWVPQAPQPLLSSSQMDGAIGQSETNMKGSKLRLKDDNFTVPQMSPQSNPKRGGRFQW 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01973 265 MobiDBLite consensus disorder prediction 247 265 - -
Spst8g01973 265 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 256 - -
Spst8g01973 265 Gene3D Classic Zinc Finger 1 93 - -
Spst8g01973 265 CDD Bbox1_BBX-like 5 47 - -
Spst8g01973 265 MobiDBLite consensus disorder prediction 230 265 - -
Spst8g01973 265 CDD Bbox1_BBX-like 55 98 - -
Spst8g01973 265 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Spst8g01973 265 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Spst8g01973 265 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst8g01973 265 SMART bboxneu5 51 98 IPR000315 GO:0008270
Spst8g01973 265 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst8g01973 265 FunFam B-box zinc finger protein 21 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01973 Spst-Chr8 26722827 26724082 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst8g01973 zf-B_box 1.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01973 8 26722827 26724082 Spst9g00112 9 860343 861422 PCT