Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01970 ATGGCTCGCTACTCTCTCTGCGCTCTACTTCTCTTAGCCGCCGTGGCCGCAGCCGCTGCCGCTGCGGCCAACACCGACACCGACGACATCCTGATCCGGCAGGTGGTGCCGGAGGGCGAGGTGGAGGACCACCTGCTGAACGCGGAGCACCACTTCTCGACCTTCAAGGCGAAGTTCGGGAAAACCTACGCGACAAAGGAGGAGCACGATCATCGCTTCGGCGTATTCAAGTCAAACCTGCGCAGGGCGAGGCTTCACGCGCAACTCGACCCCTCCGCTGTCCATGGCGTCACCAAATTCTCCGATCTTACTCCGGCGGAGTTCCAACGCCAGTTCCTCGGCCTCAAACCGCTCCGGTTGCCGGCGCACGCACAGAAGGCCCCCCTCCTCCCTACCAACAATCTCCCCAAAAATTTCGATTGGAGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGTTCGTGTGGTTCGTGTTGGTCTTTCAGTACCACGGGGGCGTTGGAAGGAGCTCACTTTCTGGCTACCGGTGAGCTATTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGACCATGTGTGTGATCCAGAACAATATGGATCGTGTGACGCAGGCTGTAATGGTGGTTTGATGAACAACGCATTTGAGTACATACTTGGGTCTGGGGGAGTACAGAGAGAAAAGGACTATCCATACACTGGAAGAGATGGCACCTGCAAATTTGACAAAAGCAAAATTGCAGTTTCGGTGTCTAATTACAGTGTGGTTTCCCTTGACGAAGAACAGATTGCTGCAAATCTTGTGAAGAATGGCCCTCTTGCAGTTGGTATCAATGCAGTTTATATGCAGACATACATTGGTGGTGTCTCTTGTCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTCTGGTGGGTTATGGTGAAGGTGCATATGCTCCTATTCGTTTTAAGGAAAAGCCTTACTGGATCATTAAGAATTCATGGGGGGAGAACTGGGGAGAGAATGGATACTACAAGATCTGTAGAGGTCGAAATGTATGTGGAGTGGATTCCATGGTCTCAACTGTAGGTGCTCTACATTCATCCAGCAGCTAA 1101 0.5213 MARYSLCALLLLAAVAAAAAAAANTDTDDILIRQVVPEGEVEDHLLNAEHHFSTFKAKFGKTYATKEEHDHRFGVFKSNLRRARLHAQLDPSAVHGVTKFSDLTPAEFQRQFLGLKPLRLPAHAQKAPLLPTNNLPKNFDWRDKGAVTNVKDQGSCGSCWSFSTTGALEGAHFLATGELLSLSEQQLVDCDHVCDPEQYGSCDAGCNGGLMNNAFEYILGSGGVQREKDYPYTGRDGTCKFDKSKIAVSVSNYSVVSLDEEQIAANLVKNGPLAVGINAVYMQTYIGGVSCPYICGKHLDHGVLLVGYGEGAYAPIRFKEKPYWIIKNSWGENWGENGYYKICRGRNVCGVDSMVSTVGALHSSSS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01970 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Spst8g01970 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Spst8g01970 366 CDD Peptidase_C1A 136 358 IPR039417 -
Spst8g01970 366 Gene3D Cysteine proteinases 20 358 - -
Spst8g01970 366 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Spst8g01970 366 Pfam Papain family cysteine protease 135 357 IPR000668 GO:0006508|GO:0008234
Spst8g01970 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Spst8g01970 366 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Spst8g01970 366 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Spst8g01970 366 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Spst8g01970 366 SMART Inhibitor_I29_2 52 108 IPR013201 -
Spst8g01970 366 SUPERFAMILY Cysteine proteinases 49 357 IPR038765 -
Spst8g01970 366 FunFam Cysteine protease RD19A 30 359 - -
Spst8g01970 366 SMART pept_c1 135 359 IPR000668 GO:0006508|GO:0008234
Spst8g01970 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 351 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01970 Spst-Chr8 26641691 26643991 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01970 8 26641691 26643991 Spst9g00325 9 3084729 3086261 PCT