LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g01965	ATGCTGAAATCAGGCATGGGAATTGGTGGGAGTAAGCAGATGAAAAAACATGTTAAGGGCACTTCCAGAAAGGGGTGCATGAAGGGAAAAGGAGGCCCTGAGAATGCCACTTGCACCTACAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCCAACCGTGGTGCACGCCTCTGGCTAGGCACATTTGAGACGGCCGGTGAGGCTGCCCGTGCCTATGATTCTGCAGCACGCAAGCTCTATGGATCTGATGCACAACTCAACCTCCCACCTCGTCCTGTGCCCATGAATCCCCATCCTCTACCACCTTACCTTCCTCCCAACCCTCAGATCCCCCAAATGCCACCACCACCACAGCCTCAAAACCCTCAGATTTTCCTTCCCTATGAACTTCTCAGTCTCTGTTCCTCTGATCTCATCAACAACCTCACCAACAACCCCAACATCATGACCAACCCCCTGGTCTCCATGCCCCCTGATCAGCATGCAATTGCTGATTCTGCGCCTGTGTACACCAGCGACTCTCTTGTCGGAATTCCCTATGAAACCAGCACCACCCCCATGGGGATTTACCCCTCCAACCCTGTGGAGATGGAGGGGAACATGCTTGGTCCTTTTTGGGGGTCAATCAACGACCTTCCTTACCCTTTGTTTGATGAGTCCATCTGGACCGAAGCTGCTATGTCTCTGGATTTCCCTGTCATACCAGATGCTGATGGAATTTATGGAGCTGAAACCTTTTATGAAGTGGGTCCTTGGGACTCTATGCAAACTCCTTGGTGCATGTAA	807	0.5204	MLKSGMGIGGSKQMKKHVKGTSRKGCMKGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETAGEAARAYDSAARKLYGSDAQLNLPPRPVPMNPHPLPPYLPPNPQIPQMPPPPQPQNPQIFLPYELLSLCSSDLINNLTNNPNIMTNPLVSMPPDQHAIADSAPVYTSDSLVGIPYETSTTPMGIYPSNPVEMEGNMLGPFWGSINDLPYPLFDESIWTEAAMSLDFPVIPDADGIYGAETFYEVGPWDSMQTPWCM	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g01965	268	CDD	AP2	38	96	IPR001471	GO:0003700\|GO:0006355
	Spst8g01965	268	MobiDBLite	consensus disorder prediction	1	31	-	-
	Spst8g01965	268	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Spst8g01965	268	SUPERFAMILY	DNA-binding domain	39	97	IPR016177	GO:0003677
	Spst8g01965	268	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Spst8g01965	268	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Spst8g01965	268	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Spst8g01965	268	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	17	99	-	-
	Spst8g01965	268	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Spst8g01965	268	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Spst8g01965	268	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g01965	Spst-Chr8	26377135	26377941	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Spst8g01965		AP2	8.8e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g01965	8	26377135	26377941	Spst8g01965	8	26377135	26377941	ECH
	Spst8g01965	8	26377135	26377941	Spst9g00329	9	3131579	3132340	PCT