Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01960 ATGGAAACCAACTCAGTTTCCAAGCTTCTAGTACTTGTTTTCACCATCTTGTTTGTGGGTTCTGAGTTGATCCATTGCAGTGTCACTTATGATAGGAAGGCCATTATCATCAATGGCCAACGGAGAATCCTCATATCTGGTTCCATTCACTACCCCAGAAGCACCCCTGAAATGTGGGAGGATTTAATTAGGAAGGCCAAAGATGGAGGCCTTGATGCTATAGACACTTATGTCTTCTGGAATGTTCATGAACCATCTCCTGGCAATTACAATTTTGAAGGGAGGTACGATCTGGTACGGTTCATTAAGACAGTGCAAAGGGTGGGGCTCTATGTCCATCTTCGTATTGGACCTTATGTGTGTGCCGAGTGGAACTTTGGAGGATTCCCTGTTTGGTTGAAGTATGTTCCTGGCATCAGCTTCAGAACAGATAATGGCCCTTTCAAGGCTGCAATGCAAGGTTTCACTCAGAAGATAGTCCAGATGATGAAGAACGAAAAGTTATATCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAAAACGAGTTTGGACCAGAAAGCAAGCAACTGGGACCTGCTGGTTATGCATATACAACCTGGGCTGCAAAGATGGCTGTTGGGTTGAATACAGGAGTCCCCTGGGTGATGTGCAAGCAAGATGATGCCCCAGATCCAGTGATAAATGCATGTAATGGTTTTTATTGTGATTATTTCTCTCCAAATAAACCATACAAGCCTAACCTTTGGACAGAGTCTTGGAGTGGCTGGTTTACAGAGTTTGGTGGTCCAATTTACCAGCGACCCGTTCAGGATCTAGCTTTTGCAGTTGCTCGTTTCATACAAAAAGGTGGCTCATATGTCAATTATTACATGTATCATGGAGGAACTAATTTTGGACGATCAGCTGGAGGGCCATTCATTACCACAAGCTATGACTATGATGCTCCAATTGATGAATACGGTTTGATCAGGGAACCTAAATATGGTCATTTGATGGACCTCCATAAAGCTATTAAGCAAAGTGAACATGCTTTGGTATCTTCAGATCCCACTGTCACATCATTAGGATCGTATGAGCAGGCTCATGTGTTCTCTTCAAGAAATGGAGCATGTGCAGCTTTTCTAGCAAACTACCATTCGAATTCTGCTGCAAGAGTGACCTTCAATAACAGGATATATGACTTGCCTCCTTGGTCCATAAGCATCCTCCCTGATTGTAAAACAGATATTTTCAACACTGCAAGAGTGAGGTTTCAAACTACACAGATACAAATGTTGCCTAGCAACTCTAAGTTGTTCTCATGGGAGACCTATGATGAAGATGTATCTTCACTAACAGAAAGTTCAAAGATTACAGCCTCTGGACTATTAGAACAGCTGAATGCCACCAGAGACACTAGTGACTATCTATGGTATATAACCAGTGTTGACATTAGTACATCAGAATCCTTTCTTAGAGGGGGAAACAAGCCCAGCATTATTGTGCATTCTGCCGGCCATGCTGTTCATGTGTTTATTAATGGTCAATTTTCAGGCTCAGCTTTCGGGACAAGTGCAGACAGAAGTTGCACATTCAATGGCCCTGTCAACCTACACGCTGGAACCAATAAAATAGCACTTCTCAGTGTAGCTGTTGGATTACCCAATGTTGGATTCCATTTTGAAACATGGAAAGCTGGGATCACTGGAGTTTTGCTTCATGGACTTGACCATGGACAGAAAGATTTGACTTGGCAGAAATGGTCATACCAGATTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTCCCAATGGGATCTCATCTGTTGACTGGATCAGAGACTCTCTAGCTGTCCGAAGCCAGTCACAGCTGAAATGGCACAAGGCTTATTTCGATGCACCTAATGGAGTTGAACCATTGGCCTTGGACCTGAGCAGTATGGGAAAGGGTCAGGTATGGATCAATGGACAAAGCATAGGAAGATATTGGATGGTTTATGCAAAGGGTGCCTGTAATTCTTGCAACTATGCTGGGACATACCGGCCTGCAAAATGCCAACTTGGTTGTGGACAACCTACCCAACAATGGTATCACGTGCCAAGGTCATGGTTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAGGAATTGGGTGGTAATCCTTGGAAAATATCTCTTTTAAAAAGGACAATACATACACCATCATCTAGTGAACCCAATTCAAATAACTGA 2220 0.4302 METNSVSKLLVLVFTILFVGSELIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDAIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKTVQRVGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVQMMKNEKLYQSQGGPIILSQIENEFGPESKQLGPAGYAYTTWAAKMAVGLNTGVPWVMCKQDDAPDPVINACNGFYCDYFSPNKPYKPNLWTESWSGWFTEFGGPIYQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIREPKYGHLMDLHKAIKQSEHALVSSDPTVTSLGSYEQAHVFSSRNGACAAFLANYHSNSAARVTFNNRIYDLPPWSISILPDCKTDIFNTARVRFQTTQIQMLPSNSKLFSWETYDEDVSSLTESSKITASGLLEQLNATRDTSDYLWYITSVDISTSESFLRGGNKPSIIVHSAGHAVHVFINGQFSGSAFGTSADRSCTFNGPVNLHAGTNKIALLSVAVGLPNVGFHFETWKAGITGVLLHGLDHGQKDLTWQKWSYQIGLKGEAMNLVSPNGISSVDWIRDSLAVRSQSQLKWHKAYFDAPNGVEPLALDLSSMGKGQVWINGQSIGRYWMVYAKGACNSCNYAGTYRPAKCQLGCGQPTQQWYHVPRSWLKPTKNLIVVFEELGGNPWKISLLKRTIHTPSSSEPNSNN 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01960 739 FunFam Beta-galactosidase 23 343 - -
Spst8g01960 739 PANTHER BETA-GALACTOSIDASE RELATED 19 730 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 SUPERFAMILY (Trans)glycosidases 27 342 IPR017853 -
Spst8g01960 739 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Spst8g01960 739 Gene3D - 603 731 - -
Spst8g01960 739 Gene3D Glycosidases 21 344 - -
Spst8g01960 739 FunFam Beta-galactosidase 446 582 - -
Spst8g01960 739 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Spst8g01960 739 FunFam Beta-galactosidase 292 420 - -
Spst8g01960 739 SUPERFAMILY Galactose-binding domain-like 402 565 IPR008979 -
Spst8g01960 739 SUPERFAMILY Galactose-binding domain-like 581 723 IPR008979 -
Spst8g01960 739 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Spst8g01960 739 FunFam Beta-galactosidase 590 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01960 Spst-Chr8 26275075 26280350 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01960 8 26275075 26280350 Spst2g00869 2 7337498 7342444 ECH
Spst8g01960 8 26275075 26280350 Spst8g01960 8 26275075 26280350 ECH
Spst8g01960 8 26275075 26280350 Spst9g00335 9 3160694 3165468 PCT