Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01951 ATGAGTGCTGCATTCCTCTACGGTTCGCTTATTCATCCACCGTCATCACCATCACCTTTGATTCAACAACAACGCTATCATTATTTATCACCACCACTCCCAATTCGCCCCCTATGCATATCCCCCCTCACCACTGCAATTGTTTCCACCACCTCCGTTCTCCAACGCGATTCCGCTGTTGAACTCGCGTCGTCGTCGTCTATCGACTCAACTGACGCCGTTTCATCGCAGAATGAAACGGTTCAGTTGGAGACGGAGCGGCACTCCGACGAAACGGTTCCCCTGCCACTCTCGTCCGAAGATAAAGGAACGAGACTTCGAAAGAAGAAAGACGACGACGCTGTTTCGGATAACCGCTTCAAGCTCCGCAACGGAAGAGAAGTTTTTGAGGAAAAAGCGTACCTCGTAGGCGTTGAGCGCAAGAATGATGTTCAGGATTTTGGAATCGAAGAGTCTCTGAGTGAATTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGCTCTACTTACCAGAAGCTTACTTCTCCAAACCCTAGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGCATTGGATGTTGAAACTGTTGTCTTTGATGACGAACTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATATTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCTCTAATCCTTGATATATTTAATCAACGAGCAGCAACACATGAAGCATCCTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGCCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCGGGAGGAAAGGTGAAGGGAATGGGTGAAAAGCAAATAGAAGTGGACAAACGTATTCTGCGTAACCAAATTGGTATTCTTAAGAAAGAGCTAGAATCTGTTAGGAAACATCGAAAGCAGTACCGTAACAGGCGATTCTCAGTACCTGTGCCAGTGGTATCTTTGGTTGGCTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTAACTGGAGCAGAAGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAACGGAAAGGAGTTTCTTCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACAACTTTAGTTGCTGCCTTCAGAGCTACCCTAGAGGAGATATCAGAGTCATCATTGATGGTGCATGTAGTTGATATAAGTCATCCCCTGGCTGAGCAACAGATAAATGCAGTCGACAAAGTCCTGTCAGAACTAGATGTGTCATCAATTCCAAAATTGATAGTCTGGAACAAGGTTGATAAAGTTAGTGATCCCCATAAACTCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCCGCTTTAAGTGGTGATGGTTTACAAGAATTTTGTAATGCAGTTCAAGACAAGTTAAAGGACTCCATGGTTTGGGTGGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTTGAGAAAATGGAATATACTGAGCAAGGGACATATATCAGAGCACACGTGCCCCTGCGTTTTGCAAGAATGCTCACACCCATGAGGCAACTGTGCGTATCGCGACCTTAA 1653 0.444 MSAAFLYGSLIHPPSSPSPLIQQQRYHYLSPPLPIRPLCISPLTTAIVSTTSVLQRDSAVELASSSSIDSTDAVSSQNETVQLETERHSDETVPLPLSSEDKGTRLRKKKDDDAVSDNRFKLRNGREVFEEKAYLVGVERKNDVQDFGIEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALDVETVVFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVDKVLSELDVSSIPKLIVWNKVDKVSDPHKLRLEAEKRDDVVCISALSGDGLQEFCNAVQDKLKDSMVWVEALVPFENGDLLSTIHQVGMVEKMEYTEQGTYIRAHVPLRFARMLTPMRQLCVSRP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01951 550 Coils Coil 298 318 - -
Spst8g01951 550 Gene3D - 243 310 - -
Spst8g01951 550 Pfam GTP-binding GTPase Middle Region 242 319 IPR032305 -
Spst8g01951 550 Pfam GTP-binding GTPase N-terminal 150 239 IPR025121 -
Spst8g01951 550 FunFam Predicted protein 144 266 - -
Spst8g01951 550 Gene3D - 324 492 IPR027417 -
Spst8g01951 550 NCBIfam small GTP-binding protein domain 326 481 IPR005225 GO:0005525
Spst8g01951 550 Hamap GTPase HflX [hflX]. 153 516 IPR016496 GO:0005525
Spst8g01951 550 Gene3D - 142 242 IPR042108 -
Spst8g01951 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 497 IPR027417 -
Spst8g01951 550 PRINTS GTP1/OBG GTP-binding protein family signature 394 412 IPR006073 GO:0005525
Spst8g01951 550 PRINTS GTP1/OBG GTP-binding protein family signature 327 347 IPR006073 GO:0005525
Spst8g01951 550 MobiDBLite consensus disorder prediction 83 114 - -
Spst8g01951 550 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 325 491 IPR030394 GO:0005525
Spst8g01951 550 PANTHER GTP-BINDING PROTEIN HFLX 82 534 IPR016496 GO:0005525
Spst8g01951 550 Pfam HflX C-terminal domain 457 525 IPR045498 -
Spst8g01951 550 NCBIfam GTPase HflX 132 486 IPR016496 GO:0005525
Spst8g01951 550 CDD HflX 284 487 IPR030394 GO:0005525
Spst8g01951 550 FunFam GTPase HflX 324 493 - -
Spst8g01951 550 Pfam 50S ribosome-binding GTPase 327 445 IPR006073 GO:0005525
Spst8g01951 550 MobiDBLite consensus disorder prediction 65 82 - -
Spst8g01951 550 MobiDBLite consensus disorder prediction 65 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01951 Spst-Chr8 25875524 25886080 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01951 8 25875524 25886080 Spst8g01951 8 25875524 25886080 ECH