Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01939 ATGTCAGGGCCGCTTGATAGGTTCGCACGTCCCTGCTTTGAGGGGTTTTCTGGCCATGATGAAAGGAGGGAGAGGAGATCGGATTTTGAGAATTCAGAGGATGATCGGCGAACGAGGATTGGTAGTTTGAAAAAGAAAGCAATCAATGCTTCAAGCAAGTTCAGGCATTCTCTTAGGAAGAAGAGCAGCAGGAGGAAGAGCGCGAGCCGAAGCAATTCGGTCTCCATTGAGGATGTTCGAGATGTTAAGGAGCTCCAAGCCGTGGATGCTTTTCGACAGGCGCTTATGTCGGATAACTTGTTGCCATCAAGACATGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAACACATGTGGGCTAACATGATCCAGTGGAGGAAAGACTATGGTACTGATACGATTATGGAGGATTTTGAATTCAGAGAGTTGGATGAAGTCTTGAAGTACTATCCACATGGTTATCATGGTGTGGATAAGGAAGGAAGACCTGTTTATATAGAAAGGTTAGGCAAGGTTGATCCCAGTAAGCTTATGCAAGTGACTACCATAGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCGTGTTCTATTGCTGCAAAGAGACATATAGATTCAAGTACAACCATTTTGGACGTTCATGGTGTGGGTTTCAAAAACCTAACCAAATCTGCACGGGAACTCATCATGCGGCTGCAGAAAATTGATGGTGATTACTATCCAGAAACATTATGTCAAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAACAAATTACTTGAAATTATTGATGTGAGTGAGCTACCTCAATTTCTTGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGACAAAGGTCCATGGCAGGATCCGAACATTTTAAAGATGGTTCTTAGTGGGGAAGTGCAATGTTCTAGGCAAATAGTTACGGTTTCTAACGATGAGGGCACCATTATTGAATGTGATAAGGCATGTTTTCCAATGCCGATAAGAAGTAGTGATACATCAACAGCAGAATCTGGATCTGAAGTCGAAGATATCACTTCTCCCAAAGCAAGTGGAAATTATACAAACCCTAGGTTAACTCCTGTCCACGAAGAAGCAAGATTGATTGGTAGGGCAAATCCTTCTGGCGGTTTCTCTGAGTATGATGAGTATGTTCCCATGGTTGACAAGGCTGTTGACCTCGGATGGAAGGAGAAACAAGTAACAACTCAAAACTCGTATGACTCAACAGAAAATTTCCTGTTGAGGACTGGAAAATCAGGTGGAAACTGTGCATATATCTGGGTTGTTATCGTGGGCTTCTTTGTTGCCATCTTTACTATTGCTCGTTCACTAGCATTTCATGTGACTAAGAGAATAAAGGACACTATATCTGATTCTGCCAAAAATATGCCTAACATGACCATTGATTCAATAACCAAGGAAGAATCTCTTCCCCCATCACCTGTTCCTAGATTAACGAAGACAGAACTCATCTCATCTGCTTTGAAACGCCTTGGTGACCTCGAAGAGAAGGTTGACATGCTACAGTCAAAACCTAATGTGATGCCATCTGAGAAAGAGGAGCTGCTGAATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCGGAACTTATTGCTACAAAGAAGGCTTTATACGAAGCTTTGATCAGACAAGAAGAACTTCTGGCATATATAGATAGTCAGGAAAGAAGTAAACTAGAACAGAAAAAGAAGTTTTGCTGGTGA 1884 0.414 MSGPLDRFARPCFEGFSGHDERRERRSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSSRRKSASRSNSVSIEDVRDVKELQAVDAFRQALMSDNLLPSRHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIMEDFEFRELDEVLKYYPHGYHGVDKEGRPVYIERLGKVDPSKLMQVTTIERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNLTKSARELIMRLQKIDGDYYPETLCQMFIINAGPGFKLLWNTVKSFLDPKTTSKINVLGNKFQNKLLEIIDVSELPQFLGGSCTCIDQGGCMRSDKGPWQDPNILKMVLSGEVQCSRQIVTVSNDEGTIIECDKACFPMPIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLIGRANPSGGFSEYDEYVPMVDKAVDLGWKEKQVTTQNSYDSTENFLLRTGKSGGNCAYIWVVIVGFFVAIFTIARSLAFHVTKRIKDTISDSAKNMPNMTIDSITKEESLPPSPVPRLTKTELISSALKRLGDLEEKVDMLQSKPNVMPSEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDSQERSKLEQKKKFCW 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01939 627 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Spst8g01939 627 SMART sec14_4 152 323 IPR001251 -
Spst8g01939 627 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Spst8g01939 627 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Spst8g01939 627 Gene3D - 140 350 IPR036865 -
Spst8g01939 627 Coils Coil 544 564 - -
Spst8g01939 627 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 614 - -
Spst8g01939 627 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Spst8g01939 627 MobiDBLite consensus disorder prediction 49 67 - -
Spst8g01939 627 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Spst8g01939 627 FunFam SEC14 cytosolic factor 140 352 - -
Spst8g01939 627 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Spst8g01939 627 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Spst8g01939 627 MobiDBLite consensus disorder prediction 382 409 - -
Spst8g01939 627 MobiDBLite consensus disorder prediction 1 75 - -
Spst8g01939 627 CDD SEC14 153 320 IPR001251 -
Spst8g01939 627 Gene3D - 57 139 - -
Spst8g01939 627 MobiDBLite consensus disorder prediction 13 42 - -
Spst8g01939 627 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01939 Spst-Chr8 25340941 25345353 Dispersed/Wgd