Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01933 ATGGATGCAACCATTGCAACCCTCAATGCAAGTGGTAATCTAGCTACCAAGGGGTTTGGGACAAAAAACAGAAGTTCTGGCTTCTGGGGTGAGAACACAAGGGGAAGTCTTAACGTAAGATTTTTCAGTACTCAACCAGGCAAGAGTTTTAAGGCTAGAAGTTTCAAGCCTGGCAATGCATACGCTGTTTACACACCAGATCTCAACAAAGATTCTAGGGTACTTCAAATACCCATTACTCAGAGTCCAAAAGCAAACCCTGAAAATGTAGCTGCCATCATATTGGGTGGAGGTGCTGGAACTCGACTCTTTCCTCTTACCAGCATAAGAGCCAAACCCGCTGTTACCATTGGAGGGTGTTACAGACTCATAGATATTCCTATGAGTAATTGCATCAACAGTGGCATCAGGAAAGTTTACGTTTTAACTCAGTTCAACTCTTTCTCTCTTAATGGCCACCTGTCTCGCACGTATAATTTTGAAAATGGAGTGAACTTTGGAGGAGGTTTTGTGGAGGTCTTGGCTGCTACTCAAACTCCTGGAGAATCTGGGAGCAAATGGTTCCAAGGGACAGCTGATGCAGTGAGGCGATTTATTTGGGTTTTTGAGGATGCCAAGAACAAGAATATTGAACAAATAATAATCATTTCTGGTGACCATCTTTGCCGAATGGACTATATGAAGCTTGTGGAGAAACATGTTGGAAACAATGCTGATGTCACAGTTTCATGTGTACCCATGGATGAACGCCGTGCATCAGAGTATGGGCTGATGAAAATTGATAGAAAGGGTCGGATTACGCAGTTTTTAGAAAACCCAAATGAATCAGATGTGAACGCAATGCGTGTTGATACCAGTATCTTAGGCTTAAGTGCAGAAGAAGCAGAGAAATATCCTTTCATTTCTCCCATGGGTGTTTCTGTATTCAGAACTGAGACCCTGCTGAAACTGCTAAGGTTGACCTGTCCTTCTGGCAATGACTTGGGATCTGAAATTATACCATCTTCTTTGAGGGACCACAAAGTCCAAGCATATATGTTCAGGGACTATTGGAAGGATATTGGAACTATCAAGTCCTTCTATGAAGCTAATCTAGAACTAACAGAACAGTCTCCAAAATTTGAATTGTATGACCAGGAGGCGCCTTTTTACACTTCCCCGAGATTCCTACCACCCACTAAAATTGTGGACTCAGTTATTTCTCATGGTTGCTTCTTGAGTGAGTGTAGAATTCAACATTCTGTTGTTGGTGTGCGCTCTCGTTTAGAGGCTGGTTCAGAGCTTCTGGATACCATGATGATGGGTGCTGACTTATATCAAACTGATTCTGAAATTGCAACTCTGCTGGCAGAAGGAAAGGTTCCAATTGGTGTAGGAGAAAATACCAAAATCAGGAATTGCATAATTGACAAGAATGCCAAGATAGGAAGAAATGTGATTATTGCCAATGCTGATGGTGTTCAAGAAGCAGACAGACCTAAAGAGGGATTCTACATTAGGTCTGGCATCGTAGTTATAGTGAAGAATGCAACAATTGAAGATGGAACAGTGATCTGA 1557 0.4207 MDATIATLNASGNLATKGFGTKNRSSGFWGENTRGSLNVRFFSTQPGKSFKARSFKPGNAYAVYTPDLNKDSRVLQIPITQSPKANPENVAAIILGGGAGTRLFPLTSIRAKPAVTIGGCYRLIDIPMSNCINSGIRKVYVLTQFNSFSLNGHLSRTYNFENGVNFGGGFVEVLAATQTPGESGSKWFQGTADAVRRFIWVFEDAKNKNIEQIIIISGDHLCRMDYMKLVEKHVGNNADVTVSCVPMDERRASEYGLMKIDRKGRITQFLENPNESDVNAMRVDTSILGLSAEEAEKYPFISPMGVSVFRTETLLKLLRLTCPSGNDLGSEIIPSSLRDHKVQAYMFRDYWKDIGTIKSFYEANLELTEQSPKFELYDQEAPFYTSPRFLPPTKIVDSVISHGCFLSECRIQHSVVGVRSRLEAGSELLDTMMMGADLYQTDSEIATLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANADGVQEADRPKEGFYIRSGIVVIVKNATIEDGTVI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01933 518 Pfam Nucleotidyl transferase 92 369 IPR005835 GO:0009058
Spst8g01933 518 NCBIfam glucose-1-phosphate adenylyltransferase 90 482 IPR011831 GO:0005978|GO:0008878
Spst8g01933 518 SUPERFAMILY Nucleotide-diphospho-sugar transferases 89 479 IPR029044 -
Spst8g01933 518 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 187 195 IPR005836 GO:0005978|GO:0008878
Spst8g01933 518 Gene3D Hexapeptide repeat proteins 387 518 - -
Spst8g01933 518 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 48 518 IPR011831 GO:0005978|GO:0008878
Spst8g01933 518 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 77 386 IPR029044 -
Spst8g01933 518 CDD ADP_Glucose_PP 92 354 - -
Spst8g01933 518 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 96 115 IPR005836 GO:0005978|GO:0008878
Spst8g01933 518 SUPERFAMILY Trimeric LpxA-like enzymes 386 518 IPR011004 -
Spst8g01933 518 CDD LbH_G1P_AT_C 394 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01933 Spst-Chr8 25070006 25074043 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01933 8 25070006 25074043 Spst9g00357 9 3278065 3281924 PCT