Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01920 ATGAAAAGTGGTTTCCATTTAATTGAAGAGGTAGGCTTAGTAGCATTTACATTTGCTCTGGGGTGTGGCACTGCAAAGAGCAAAATGGCTTTGGAGTTTGAGGTACAGCCTTGGAAGGATTCACCACATTCCTCACCACCCTTCGTGTCCTCCAACTTCTCTGCAAGATTTCCTCACTTTCTAGGCCCTTGTCTCACGGCTTTGAATCTTGAAACACAACTTGTCTTTCAAGTTAAACCTCCCATAACTGCAGCAACAAATGTGTCTCACTCCATCATTGTAGGTAATTATTCCACACCTATCATAATGCCATTCAGGAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATCAGCAACATGTGCAGAAGAGGAGGAGAGGCCAAGCATGTTCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCACCACCACCTCCACCATCGTCGTCATCATCATCATCATCATATTCTTCGTCTTCTTCATCACAGAGCCGGTGGGCTAACTTACCACCTGAGTTGCTACTAGACATAATTCAAAGATTGGAAGCCAGCGAAACATCCTGGCCTGCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCCATATCACTGAAGCAGCCTGGCCCGAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATATCTCGGCCTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAAAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGATCGCTGATGATTTCTCTCGAAATAGCAACACCTACATTGGAAAGTTGAGGTCTAATTTTCTGGGCACCAAGTTCACAATCTTGGATGGCGAGTCCCCGCATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCTAAGGTTGCTGCTGCTAACTACAAAGTGGCCACGGTATCTTATGAACTCAATGTCCTCCGAACAAGGGGTCCAAGGCGAATGCGGTGTACCATGCACTTGATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCTCCTACTCCTTTGAAGTTTACCAATTATCTTAATGAGCATGCATCCACCACCACCACCCCAGACTCGAAAGGAAAGAAGCCAGAAGTTGTTGAGTTTGACACAACTGGCACTGACAATACTCAAGAATCAAGCCAAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCGGAACAAGAAAAAGTGATTCTACAATTTGGAAAAATTGGGAAGGACATATTCACAATGGATTACCGATACCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1599 0.4528 MKSGFHLIEEVGLVAFTFALGCGTAKSKMALEFEVQPWKDSPHSSPPFVSSNFSARFPHFLGPCLTALNLETQLVFQVKPPITAATNVSHSIIVGNYSTPIIMPFRSIVRELKEIGEGISNMCRRGGEAKHVHRHGKSHIAPECSLPPPPPPSSSSSSSSYSSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLIADDFSRNSNTYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNYLNEHASTTTTPDSKGKKPEVVEFDTTGTDNTQESSQREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01920 532 PANTHER TUBBY-RELATED 160 530 - -
Spst8g01920 532 CDD F-box_AtTLP-like 171 215 - -
Spst8g01920 532 MobiDBLite consensus disorder prediction 406 439 - -
Spst8g01920 532 Pfam Tub family 232 527 IPR000007 -
Spst8g01920 532 Gene3D Tubby Protein; Chain A 229 532 IPR025659 -
Spst8g01920 532 SUPERFAMILY F-box domain 159 215 IPR036047 GO:0005515
Spst8g01920 532 MobiDBLite consensus disorder prediction 127 169 - -
Spst8g01920 532 SUPERFAMILY Tubby C-terminal domain-like 220 532 IPR025659 -
Spst8g01920 532 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Spst8g01920 532 Pfam F-box domain 171 218 IPR001810 GO:0005515
Spst8g01920 532 MobiDBLite consensus disorder prediction 424 439 - -
Spst8g01920 532 ProSitePatterns Tub family signature 2. 517 532 IPR018066 -
Spst8g01920 532 Gene3D - 164 217 - -
Spst8g01920 532 PRINTS Tubby superfamily signature 510 532 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 442 459 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 460 476 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 303 327 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 287 303 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 489 508 IPR000007 -
Spst8g01920 532 PRINTS Tubby superfamily signature 352 379 IPR000007 -
Spst8g01920 532 ProSitePatterns Tub family signature 1. 460 473 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01920 Spst-Chr8 24539474 24542584 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst8g01920 Tub 7.2e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01920 8 24539474 24542584 Spst8g01920 8 24539474 24542584 ECH