Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01918 ATGAGTTGGAGAACCCTAGCTTCCACTTCAAGACACACGTTCAAGAGACTCAATGCCATTTTCCGATCCCATTCCACCACCCTTTCTTCTTTGCAGCAATCACGCGCCTCTTCCGCCACCTTTCTCCACGCGCCGTTCACCACCACCACCCTTCACTCTGCCCAAACCACCAACGCCCTCATTGACCCCAGAGTCCACGCGCCGCAAAACGACGCCGTCGTCGATGGCGACGACACGACGAACGAGTTTCTATCGCGATTCGTGTGGATAATGCGGAAGAAGGTGAAAGAAGCGTACCCGGACTCCGACAAGGCCACCGTGGATGGCATGCTGGTGGCGATCGTTGAGAGGGTTACGTCGGAGATGGAAAAAGGCGAGGGAGTTGAAACGGGGTCGTTGGGTTCGGGGGATTTCAGCGACGATTTGTGGAGAACGGTGTGGGAGGTGAGCAATATGGTTTTGGAGGATATGAACAAGGAGAGGAAGAAAGAGAAAATGAAGGGCTTCTTGCAGTGTGAAGAGGTTAAGGAAATGTGCAGATTCGCTGGTGAAGTTGGCATTCGCGGTGATTTGATTAGGGAGCTTAGGTTCAAGTGGGCGCGTGAGAGGATGGAGGAACATGAATTCTACGAGGGTTTGGAGAGAATAAGGAAAGAGGCACAGAATGAGGAGAAGGAAAGTGATGTTGGTGAGAAGGAGAAGGAGAAGGAGAAGGTTGTTGTTGGACTTCCCAAAAGGAGAGGTAAGATAAGGTACCAAATTTATGGGCTTGATCTCTCTGATCCCAAGTGGAGACAAGTGGCTGATAGGATCCATGAGGCAGAGCAGGTATTCTGGACTCAGGAGCCGAAGGCAATTACCGGGAAAGCGAAGATTGTTACATCGAAGATTCTGTCGTCGAAGGAGGATGATGATGGCTTGCAAAGCCTGTTGGATGAGTGGGTGGAGCTCGTGCAACCTAGCCGGTTGGAATGGATGGATTTACTTGACAAATTGAACGAGCAGAATCGTAGTCTGTACTTGAAGGTGGCTGAAATGGTATTGACTGAAGATTCTTTCCAAACAAATGTCTATGACTACTTTAGGCTTATAGATATGTATGCTAAAGAGGACTGCTTTGATGATGTCGAGAGATTGCTAAAGAAGATGAGTGAAAATGATATACAACCTGATGCTTCAACAGCCAGTGCGTTGGTCCACATGTACTGCAAGGGAGGCAATCTTGCCCGTGCAAATGAAGCATTTGAAATGTTGACGGGCCTGGGTTTCCAACCAGACTTCCAAGTCTACAAATCAATGATCATGGCATTTGTGAATAATGACCAGCCTAAGTTGGCCGAGAAATTGATGAGGGAGATGGATACGAGAAATATTAAACCCACGGAGGAATTATACATGGCAATGCTCCGTTCTTTTTCTCAACTTGGTGATACTAAAGGAGCTGACCGAATTTCGTTAGCTATGCAGTTTGCAGGGTTCCAACAGAGTGTGGAGGCATGCACCCTACTTATTGAGGCAAATGCACTTACTGGTGACCCTTATCAGGCAAGAAGCCATTTTGACTACATGATTAACGTTGGGAATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAGAAAAACTACTTGGACGATGCATTGGAACTACTTTTGAAGTTAGAAAGCGATGGGTTTGAGCCTGGGGTAGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTCAGTTGCAGCTTGTTGATGAAGTTGAGCAGCTTTTAGGAAAAATAGCTATGCAGGGTGAGGCTCCTCCTTTTAAGCTTCAAGTGAGTCTCTGTGATATGTATGCAAGGGCTGGAAATGAGAAAAAGGCCCTTCAAATTCTAGGCGTTCTGGAAGCTAGGAAGGATGAATTAGGACAAGCTGAGTTTGAGAGAGTTATAAGAGGCCTTATTGATGGTGGGTTTCAGCAGGATGCACAAAGAATATGTCGGATCATGGAGGCACAGGGTTTCGATGCATCAAGGGTTAAGGTTAACCTTTTGAAGCCTGTCTCCCGACCACCGAGTATGAGATAG 2067 0.4722 MSWRTLASTSRHTFKRLNAIFRSHSTTLSSLQQSRASSATFLHAPFTTTTLHSAQTTNALIDPRVHAPQNDAVVDGDDTTNEFLSRFVWIMRKKVKEAYPDSDKATVDGMLVAIVERVTSEMEKGEGVETGSLGSGDFSDDLWRTVWEVSNMVLEDMNKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLIRELRFKWARERMEEHEFYEGLERIRKEAQNEEKESDVGEKEKEKEKVVVGLPKRRGKIRYQIYGLDLSDPKWRQVADRIHEAEQVFWTQEPKAITGKAKIVTSKILSSKEDDDGLQSLLDEWVELVQPSRLEWMDLLDKLNEQNRSLYLKVAEMVLTEDSFQTNVYDYFRLIDMYAKEDCFDDVERLLKKMSENDIQPDASTASALVHMYCKGGNLARANEAFEMLTGLGFQPDFQVYKSMIMAFVNNDQPKLAEKLMREMDTRNIKPTEELYMAMLRSFSQLGDTKGADRISLAMQFAGFQQSVEACTLLIEANALTGDPYQARSHFDYMINVGNKPDDRCTASMIAAYEKKNYLDDALELLLKLESDGFEPGVATYSVLVDWLGQLQLVDEVEQLLGKIAMQGEAPPFKLQVSLCDMYARAGNEKKALQILGVLEARKDELGQAEFERVIRGLIDGGFQQDAQRICRIMEAQGFDASRVKVNLLKPVSRPPSMR 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01918 688 Coils Coil 213 235 - -
Spst8g01918 688 Gene3D Tetratricopeptide repeat domain 485 685 IPR011990 GO:0005515
Spst8g01918 688 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Spst8g01918 688 NCBIfam pentatricopeptide repeat 363 392 IPR002885 -
Spst8g01918 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Spst8g01918 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Spst8g01918 688 PANTHER OS07G0661900 PROTEIN 90 674 - -
Spst8g01918 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Spst8g01918 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Spst8g01918 688 Pfam PPR repeat 537 563 IPR002885 -
Spst8g01918 688 Gene3D Tetratricopeptide repeat domain 331 484 IPR011990 GO:0005515
Spst8g01918 688 Pfam Pentatricopeptide repeat domain 378 440 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01918 8 24533517 24535857 Spst8g01918 8 24533517 24535857 ECH