Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01962 ATGTCTTTCGATGATGTTAAGGCTGCTGCTACTGAGTTCGCTAGGGGATTTAATCACAGTTACTACCACCCGTTGCACATAGCAATACTAAAAGGAGATTGGAAATCTACAAAGGCTTTTATTGACAATGACCCAAGTGCATTGACTGCAAAGATAACCATACTAGGCAGGACTGCACTGCATGTTGCAGCTGTAGGAGGGCAGTGGCAAATTGTTGAGAAGTTGGTGCAACATGTTCCTACACAAGCACTTGCAGAGCTGGACTTGATGGGTTGTACTTGCCTTCACTATGTTGCAATGGGTGAAAGCAGAAGTGCTGCCAAGGCATTGGTGGCTAAAAGTCCTTCTCTGACACAACTCACCGACTTTAAAGGATTCACACCACTTACCTACAGCATTACCTCAGCTAGATGCAAAGAAATGGTATGGTTCTTTGTTTTGAATACTACAGATGAGAGACCTGGCTCTCCATTCTCTGGTCCTTCTGCTGGTCAACTTGTTGCTTTGCTTACTGCTGCAGGATTTCATGATGTCACTTTATATCTTCTCCAGCGCTACCCAAATTTGGCTACTCTCTCAGATTCAACGGGAAGCATTATACTTAATGTTTTGTCAAAACTGCCCTCGGACTTTCAAAGTGGGAGTAAGCTTGGGTTTTGGAAAAGATGCATTTACCACTCTGTGCCAGATGAACATGAGTTTTTACCACCAAGACATTTGAGAGGAAATGTGAAAGATTCTTTTGGGAATTCAAGCCATAACCAATCTTATTTTGGAAGTACAATATGGAATGGAATTCAGAATATTGTTCCTGGCATGAAGCGTGTCAGAGAGGCAAAGTTGAGACATATATCTGCTGAACGATTGGTGGAACTCGTTTGCACACAGGTTTCAATAATGAATGACACTGAATTCTGGCAGTCTTTTGTGAGTGCCGACATTGTTTTCAATGCCACATCATCCGGCATAGTTGAAATTTTAAGGATCTGTTTCCAGTTTTTTCCTGATTTGGTTTGGACTCACATGCCAAATGAAGGATATGTAGCTCAAATTGCCATCAAGTATAGGCAAGAGAAGGTTTTTAGTCTTCTATGCAAGATGCCTATAGTTTGCAAGTTTTTAATCCTGGCATTAGATGAATCACAAAACACCACATCACATCTAGCAGCAAGGTTTGCTTCTCCACAACAGGCATCAATTTCTGGTGCTGCCTTTCAAATGCAAAAAGAGTTGCAGTGGTTTAAGGAAGTAGAGAAATGGGATCACCCTCTTCATAAAGAAGTTAAAAACAAAGATCGTAAAACACCTTGGCAATTGTTCAGGGAAGAGCATAAGCCCTTGCTTGAAGAAGCAAAGAATTGGATGAAGGATACATCAAACTCTTGTATGTTGGTGGCAACTCTTATTGCTACAGTTGTCTTTGCTGCTTCTATAACGGTACCTGGAGGAAACAACCAAGACAAAGGATTTCCATTATTCTTGTCAGATAACACATTCATGGTGTTCATTGTGTCGGATACATTAGCTTTGTTTTCCTCCATGGTTTCCCTCTTGATGTTCCTTTCAATCCTAACTGCAAATTATGCAGAAGAAGATTTTCTCAAGAGATTACCTGAGAGAATAATATTAGGTCTGGCATCTTTGTTCCTTTCCATAGTAACTACAATGATAGCATTTGGTGCATCTCTGGATTTGTTGCTAAGGGAGAGACTGAAATGGGTGTCAATACCAATTGCTCTTCTGGCATGTGTCCCGGTTGCTCTATTTGCAAGGCTTCAACTTCCCTTGTTCATACAAATGATCATATCAACTTATGGTTCTCGCATATATCATCATCAAAGTCTTTGGTGA 1851 0.4079 MSFDDVKAAATEFARGFNHSYYHPLHIAILKGDWKSTKAFIDNDPSALTAKITILGRTALHVAAVGGQWQIVEKLVQHVPTQALAELDLMGCTCLHYVAMGESRSAAKALVAKSPSLTQLTDFKGFTPLTYSITSARCKEMVWFFVLNTTDERPGSPFSGPSAGQLVALLTAAGFHDVTLYLLQRYPNLATLSDSTGSIILNVLSKLPSDFQSGSKLGFWKRCIYHSVPDEHEFLPPRHLRGNVKDSFGNSSHNQSYFGSTIWNGIQNIVPGMKRVREAKLRHISAERLVELVCTQVSIMNDTEFWQSFVSADIVFNATSSGIVEILRICFQFFPDLVWTHMPNEGYVAQIAIKYRQEKVFSLLCKMPIVCKFLILALDESQNTTSHLAARFASPQQASISGAAFQMQKELQWFKEVEKWDHPLHKEVKNKDRKTPWQLFREEHKPLLEEAKNWMKDTSNSCMLVATLIATVVFAASITVPGGNNQDKGFPLFLSDNTFMVFIVSDTLALFSSMVSLLMFLSILTANYAEEDFLKRLPERIILGLASLFLSIVTTMIAFGASLDLLLRERLKWVSIPIALLACVPVALFARLQLPLFIQMIISTYGSRIYHHQSLW 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01962 616 SMART ANK_2a 90 119 IPR002110 GO:0005515
Spst6g01962 616 SMART ANK_2a 20 50 IPR002110 GO:0005515
Spst6g01962 616 SMART ANK_2a 55 84 IPR002110 GO:0005515
Spst6g01962 616 ProSiteProfiles Ankyrin repeat profile. 55 78 IPR002110 GO:0005515
Spst6g01962 616 SUPERFAMILY Ankyrin repeat 24 250 IPR036770 -
Spst6g01962 616 PANTHER CASKIN 53 606 - -
Spst6g01962 616 Pfam Domain of unknown function 453 563 IPR026961 -
Spst6g01962 616 Gene3D - 5 157 IPR036770 -
Spst6g01962 616 ProSiteProfiles Ankyrin repeat region circular profile. 55 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01962 Spst-Chr6 19181592 19185552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01962 410 587 Miscellaneous Gene Families AT3G12360 28.090 1.89e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01962 6 19181592 19185552 Spst6g01962 6 19181592 19185552 ECH