Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00740 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGAGCTTGTTTGGGACCAGACCTTTTTGCAGGCTCAAAACTTGGAGTTCCCTAAGCCTCCTCCTATGAGGAAGCAACAGCAACAAACTCAGTCACCGGAGCCTTTGAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCGCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACGCTGCGCAACGTTCCTGTTGGTGGTGGTAGGAAGAATAAGCGAGTCAAGAAATCAACCTCTCCAACCACAGCCACAGCTACAACCACCACCTCAAATGCCAATATGGATGGTGAGTTGAGTAACCATATCACAATTCCTCCCCTTGCAGTTGATGATCACAATACCAGACCTTCCTCTCTTTGCCATTCTTTGTGCCTGCCACAACAGAATCTGATAAGTAACAAAGTTTCAGAAGGCAAAGACTTTGGTATTAACAACGGCATCTTTCTGAGTTCAACTGTGCCTTTTCCTAAAAACCAAAGCCTTCTCTTCCCCTTCACAACCTCAAACTCTTTTGACACTAACACATGTGCAATATCTAACTCTTTGCAATCCTCCAGTACGTATAACTACGGTGAAGAGTTTAAAATAATGGAGGAGCCAACCGTCAACAGTATAATGCCCAGCACCAGTGGTGGCACCAGCACACAACCATGGGAGATAGCAGCAACAAGTTCTGGTTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATTGATACGTTGGTCTCAACTGATCCAAATAATCCTTGGGATGACTCTGATATCAAACCCTGA 852 0.446 MGLSSKQVSNRELVWDQTFLQAQNLEFPKPPPMRKQQQQTQSPEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSTSPTTATATTTTSNANMDGELSNHITIPPLAVDDHNTRPSSLCHSLCLPQQNLISNKVSEGKDFGINNGIFLSSTVPFPKNQSLLFPFTTSNSFDTNTCAISNSLQSSSTYNYGEEFKIMEEPTVNSIMPSTSGGTSTQPWEIAATSSGLEMSNYWSWEDIDTLVSTDPNNPWDDSDIKP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00740 283 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Spst6g00740 283 MobiDBLite consensus disorder prediction 87 124 - -
Spst6g00740 283 MobiDBLite consensus disorder prediction 103 124 - -
Spst6g00740 283 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
Spst6g00740 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 209 IPR045174 GO:0003700|GO:0006355
Spst6g00740 283 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Spst6g00740 283 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00740 Spst-Chr6 6693707 6694558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00740 41 124 C2C2-Dof Transcription Factor Family AT5G60200 62.791 7.62e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst6g00740 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00740 - - vra:106774613 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00560 3 9174483 9175436 Spst6g00740 6 6693707 6694558 PCT