Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02126 ATGTCGACATCATCATTGGTAGAGTCTCTCGTTCTTCAACTCCATGAGATCTCAGCTGTCAAATTTGGCAACTTCAAGCTCAAATCTGGCATCTTTTCACCAATCTACATAGACCTCCGCCTCATCATATCTTACCCTTCTCTCCTCCAGCAAATCTCTCAAACCCTTATCTCCTCAGTCTCTTCCACTTCCTTTGATCTTGTATGTGGTGTCCCCTACACTGCCTTACCAATTGCTACATGTGTCTCCCTTGCCCAAAACATTCCCATGGTCATGCGCAGGAAGGAAATCAAAGATTATGGCACTGCTAAAGCTATTGAAGGTGATTTCAAGCCTGGCCAGAGTTGCTTGATCATTGAGGATTTGGTTACAAGTGGCACATCAGTTTTGGAAACGGCAGCACCACTGCGTGCTTCAGGGTTGAAGATCAGTGATGCCGTTGTCTTGATTGATAGAGAGCAAGGGGGGAGAGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTGATATGGTGAAAATTTTGAGCAATCATGGGAAACTTAACGAGGAAATGGCAGGGGTTGTTATGAAATTCTTAGAGGAGAATCGGAAGGTTACAGCTTTGGCAAAGGTGGAAAAGCCTGCAACAAGGATCAAGGCTTTGCCACTTGAGGAGAGGGCTAGGCTCTCAAAGAATCCAATGGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGCCAGTAATTTGTGTCTGGCTGCCGATGTTGGAACTGCAGCTGAATTGCTTGAACTTGCTGAGAAGGTTGGACCTGAGATATGCCTACTGAAGACTCATGTGGATATTTTTCCAGATTTTACTCCTGATTTTGGCTCAAAGCTTCTGTCGATTGCTGAAAAGCATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGATATTGGTAACACAGTGACCATGCAATACGCGGGAGGGATCTTTCACATATTGGATTGGGCTCATATAGTAAATGCTCACATAATCTCAGGTCCTGGAATTGTTGATGGATTAAAATTGAAGGGTTTACCTCGTGGCAGGGGTTTATTACTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTATACCGCAGCTGCAGTAAAAATTGCTGAGGATCATTCTGACTTTGTAATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCAGGGGCACCTATAAATCCCTCTTTCATTCAGGCAACCCCTGGAGTTCAAATGGTAACTGGTGGTGATGCTTTAGGGCAGCAATATAACACTCCATATTCTGTGGTTCATGATAGGGGGAGTGACATCATCATTGTGGGACGTGGCATCATCAAAGCAACAAACCCTGCTGAGGCAGCTCGTGAATACCGTGTTGAAGGGTGGAAAGCATATTCGGCTAAGTCTACTTGA 1437 0.4426 MSTSSLVESLVLQLHEISAVKFGNFKLKSGIFSPIYIDLRLIISYPSLLQQISQTLISSVSSTSFDLVCGVPYTALPIATCVSLAQNIPMVMRRKEIKDYGTAKAIEGDFKPGQSCLIIEDLVTSGTSVLETAAPLRASGLKISDAVVLIDREQGGRENLEENGIKLHAIIKLTDMVKILSNHGKLNEEMAGVVMKFLEENRKVTALAKVEKPATRIKALPLEERARLSKNPMGKRLFEIMAEKASNLCLAADVGTAAELLELAEKVGPEICLLKTHVDIFPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYAGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKATNPAEAAREYRVEGWKAYSAKST 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02126 478 Gene3D - 1 211 IPR029057 -
Spst5g02126 478 Pfam Phosphoribosyl transferase domain 56 158 IPR000836 -
Spst5g02126 478 CDD OMP_decarboxylase_like 248 465 - -
Spst5g02126 478 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 303 316 IPR018089 GO:0004590|GO:0006207
Spst5g02126 478 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 251 IPR023031 GO:0004588|GO:0006221
Spst5g02126 478 SUPERFAMILY Ribulose-phoshate binding barrel 221 474 IPR011060 -
Spst5g02126 478 FunFam Uridine monophosphate synthetase 217 478 - -
Spst5g02126 478 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 4 476 - -
Spst5g02126 478 NCBIfam orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Spst5g02126 478 NCBIfam orotidine-5'-phosphate decarboxylase 248 466 IPR014732 GO:0004590|GO:0044205
Spst5g02126 478 FunFam Uridine monophosphate synthetase 3 207 - -
Spst5g02126 478 SUPERFAMILY PRTase-like 4 194 IPR029057 -
Spst5g02126 478 CDD PRTases_typeI 65 172 IPR000836 -
Spst5g02126 478 Gene3D Aldolase class I 216 477 IPR013785 -
Spst5g02126 478 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 246 465 IPR001754 GO:0004590|GO:0006207
Spst5g02126 478 SMART OMPdecase_2 247 465 IPR001754 GO:0004590|GO:0006207
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02126 Spst-Chr5 56642361 56645018 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02126 5 56642361 56645018 Spst5g02126 5 56642361 56645018 ECH
Spst5g02126 5 56642361 56645018 Spst11g00115 11 2480233 2483671 PCT