Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02123 ATGTCTGTTCAACCTGAAAATTCTGCTGCCAATGGCATACCAGGATCAGGACCATCATGTCTTTATGATCTCTTTTGTTCTGAAACACCAAGTTTGAATGCTCAACGTGTAAGAGATGGATGGGAGCCTTCTGGTCCACAGAAAAGGATAGACAATTTGATGCGTCAAGCTGGGAACAAGTATTGTGCCGATTGTGGATCGTTGGAGCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGTATCAAATGCTCTGGTATTCATAGAAGCCTTGGAGTCCATATATCCAAGGTTCTATCCCTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGTGGAAATACGGTGATCAATAAGAAGTATGAAGCTTATGTGCCAAGTCACATAAGAAAACCAAAACCAAATTCTTCTTTTGAGGAGCGCTCAGAATTTATTAGGAGAAAATATGAGTTTCAACAGTTTTTGGATTCTGAGGAGAACTTGTCTTGTCCCTTCATACCATCTCATGCAAGAAATTCTTCCCCAAGCAATTCATCCCAAGAAAAAAAGAATTATGATAAAGTTCCAACAAGACACCGTATTGGGAGTGCATTACGAAACAGTTGGGGAAGAAAAGATTCAGAGTCGTCAAAGAGTTCAAAGAAAACCAGCAACTCAATGGCAGGTATGATTGAATTTGTGGGGTTGATCAAGGTGAATGTGGTTAAAGGCACTAATCTTGCAGTTCGTGATGTAATGTCTAGTGATCCTTATGTCATCATATCTCTGGGTCACCAATCATTGAAGACCCGTGTCATAAAGAACAATCTAAACCCGATTTGGAATGAAAGCCTAATGTTGTCAATCCCTGATCACATTCCTCCTCTAAAAGTCATTGTGTACGACAAGGATACTTTCTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTTGTTTCGGTTGCAAAGGCGCATGAGAAATCTTCCATGAATGAGTTCATGCAGCTTGAAAAATGGATATCAGATAGTGACAGCACTCATAATAGAGATGGCATCATCTCCTTTGAAGATGGCAAAATCAAACAGAATATTTCGTTGAGGCTACAAAATGTTGAGAGAGGTGTTTTGGAGATTGAACTTGAATGTGTTCCTTTAACTCAATAG 1176 0.3946 MSVQPENSAANGIPGSGPSCLYDLFCSETPSLNAQRVRDGWEPSGPQKRIDNLMRQAGNKYCADCGSLEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKLGGNTVINKKYEAYVPSHIRKPKPNSSFEERSEFIRRKYEFQQFLDSEENLSCPFIPSHARNSSPSNSSQEKKNYDKVPTRHRIGSALRNSWGRKDSESSKSSKKTSNSMAGMIEFVGLIKVNVVKGTNLAVRDVMSSDPYVIISLGHQSLKTRVIKNNLNPIWNESLMLSIPDHIPPLKVIVYDKDTFSTDDFMGEAEIDIQPLVSVAKAHEKSSMNEFMQLEKWISDSDSTHNRDGIISFEDGKIKQNISLRLQNVERGVLEIELECVPLTQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02123 391 CDD C2_ArfGAP 234 378 - -
Spst5g02123 391 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 43 391 IPR044518 GO:0005096|GO:0005543
Spst5g02123 391 Pfam Putative GTPase activating protein for Arf 48 163 IPR001164 GO:0005096
Spst5g02123 391 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 234 326 IPR035892 -
Spst5g02123 391 MobiDBLite consensus disorder prediction 173 224 - -
Spst5g02123 391 FunFam stromal membrane-associated protein 1 isoform X1 37 167 - -
Spst5g02123 391 Gene3D Arf GTPase activating protein 33 169 IPR038508 -
Spst5g02123 391 MobiDBLite consensus disorder prediction 173 190 - -
Spst5g02123 391 PRINTS HIV Rev interacting protein signature 78 95 IPR001164 GO:0005096
Spst5g02123 391 PRINTS HIV Rev interacting protein signature 59 78 IPR001164 GO:0005096
Spst5g02123 391 PRINTS HIV Rev interacting protein signature 99 120 IPR001164 GO:0005096
Spst5g02123 391 SMART arf_gap_3 47 169 IPR001164 GO:0005096
Spst5g02123 391 Pfam C2 domain 236 327 IPR000008 -
Spst5g02123 391 SMART C2_3c 236 331 IPR000008 -
Spst5g02123 391 Gene3D C2 domain 234 390 IPR035892 -
Spst5g02123 391 ProSiteProfiles C2 domain profile. 218 333 IPR000008 -
Spst5g02123 391 CDD ArfGap 50 156 - -
Spst5g02123 391 SUPERFAMILY ArfGap/RecO-like zinc finger 47 162 IPR037278 -
Spst5g02123 391 ProSiteProfiles ARF GTPase-activating proteins domain profile. 47 169 IPR001164 GO:0005096
Spst5g02123 391 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 233 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02123 Spst-Chr5 56617993 56622081 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02123 5 56617993 56622081 Spst11g00114 11 2472489 2478686 PCT