Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02063 ATGTGCGGTGGTCCGGAGAAATCAAAATCTCCTTCAACTCCATCATCATCTGCTGTAGAAGGTTCAACTAACGCCAAAGACATGAAAAATATAACTGTACCTGCTGAAGATTCTTTTTCCTGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGTGATGTTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCTGGAGCAGCGAACTCCTTTAATGGTCGCTGCCATGTATGGGAGTATAGATGTTCTAAAACTTATACTCTCGTGTCCGGAGGCTGATGTCAATTTCTCCTGTGGGACAGATAAAAGCACTGCTCTTCATTGTGCTGCATCAGGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTATCGTCTGGTGCTGACATCAGTTGTGTGGATTCTAAGGGAAATCGTCCTGTTGATGTCATTGTTGTTCCTCCTAAGCTTGAAGGTTTGAAGGCAAGTCTTGAAGATCTGCTTTCAGATAGTGCGTGTGATGGGTCTCTTGGTGAATGTTTTATTCCAGTATCAGCTAATTCATCATGTTCTGATTCAGCCGCTCATTTATTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGGGTACAGATATAGCTGTCAATTCCGCTTCCGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAGAACAGTATTTATGCAACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGACGAGACCCAAGAAAGTTCCATTACAGTTGTGTGCCATGCCCAGAGTTTAGAAAGGGGGCTTGTAGACGTGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTGCATCCGGCCCAATATCGGACAAGGCTGTGCAAAGATGGCACTAGTTGCAATAGAAGAGTATGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCAACTGGATCTGCCGTTCCTTCACCCCGTTCATCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTGTTTCCTGGTTCGCCATCATCACTTTCTGCTATGTCACCATCTCCCTTTGCTCAACCAATGTCTCCGTCTACAAGTGGCATTTCTCACTCATCTGCTACTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGATTAAGATCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTAAATGACATGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAATCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCTCCCAGGTATTCTGACCCAGCAGCGGGTTGTGTATTTTCCCCAACACACAAATCTGCTGTTTTGAATCAGTTTCAACAACTTCAAAGTTCGTTATCACCAATAAATACAAGTGTCTCATCTCCTAGGAATATTGAGCATCCTCTTTTACAGGCTTCATTTGGTGTTTCTTCTCCTGGAAGGATGTCACCAAGAAGTTTGGAACCAATCTCTCCAATGAGTGCCCGATTAACGACATTTGCACAGTGGGACAAACAGCAGCAGCAGCAGCTGCGGAGCCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAGTTGTTGGGTCCTCAGTTAACTCCTGGTCTAATTGGGGTTCTCCTCACGGGAATGGAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAATCAATGGGGAAGAGCCTGATCTATCCTGGGTTCAAACCCTTGTGAAGGAATCTCCATCCGAGGTAAAAGAGAAGTTGGCAGGTTCTTTGCCTGTTGCATCTGCAGATGGACAGAATTCCAATTCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAA 2178 0.4412 MCGGPEKSKSPSTPSSSAVEGSTNAKDMKNITVPAEDSFSCLLELASNNDFEDFKLALDSDVSLINEVGLWYVRQIGSKQIVLEQRTPLMVAAMYGSIDVLKLILSCPEADVNFSCGTDKSTALHCAASGGSVNAVDVVKLLLSSGADISCVDSKGNRPVDVIVVPPKLEGLKASLEDLLSDSACDGSLGECFIPVSANSSCSDSAAHLLSPENGLPSSPMASKGTDIAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSTSGISHSSATWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDMSCFSQPRPGAISVNRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAGCVFSPTHKSAVLNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLTTFAQWDKQQQQQLRSLSSRDLGAHNPVSVVGSSVNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGINGEEPDLSWVQTLVKESPSEVKEKLAGSLPVASADGQNSNSQVESIDHSVLGAWLEQMQLDQLVV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02063 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Spst5g02063 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Spst5g02063 725 SUPERFAMILY Ankyrin repeat 30 164 IPR036770 -
Spst5g02063 725 MobiDBLite consensus disorder prediction 1 27 - -
Spst5g02063 725 SMART ANK_2a 119 151 IPR002110 GO:0005515
Spst5g02063 725 SMART ANK_2a 84 114 IPR002110 GO:0005515
Spst5g02063 725 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Spst5g02063 725 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Spst5g02063 725 Gene3D - 23 177 IPR036770 -
Spst5g02063 725 PANTHER UNKEMPT FAMILY MEMBER 44 677 IPR045234 -
Spst5g02063 725 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Spst5g02063 725 Gene3D - 297 360 - -
Spst5g02063 725 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Spst5g02063 725 MobiDBLite consensus disorder prediction 402 423 - -
Spst5g02063 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Spst5g02063 725 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Spst5g02063 725 MobiDBLite consensus disorder prediction 8 27 - -
Spst5g02063 725 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Spst5g02063 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02063 Spst-Chr5 56063493 56065670 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst5g02063 Ank_2 4.7e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02063 5 56063493 56065670 Spst11g00199 11 7355608 7357698 ECH
Spst5g02063 5 56063493 56065670 Spst5g02063 5 56063493 56065670 ECH
Spst11g00199 11 7355608 7357698 Spst5g02063 5 56063493 56065670 PCT