Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01834 ATGGAAACTGAGAGCGCAGTGGAGAGGTTGAAGTTGCAATATGTGATTACAAAGATGAGTGTGATGTATAGTCCTGTTCTCAAGTACTCAGAGATGGAGCTTCAGCTAAGGAAAAACCAAGAAATGGATTCAGGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCATTGTTGGCCAGCCTTATTGATAACAACATTCATGGCTGTGTCAATGAGGAAGCTTTCACAAGTGAGACTCATCAGCATTATATTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCCAAATTGTTACCATCCAACAATGGATGGAGCGATTCAGAAGCTTTGCAAGAATTTGGAGGCAAGCCTGTAAAACAGGAACTAGGGGAATCTGTTCCACAAGGACCACCACAACAGAATGAATACTCTTATGGTGGCTCTCAATTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGGATCTTCCAGTGCTTCTGGCAATGCTTTTGGTGGCTCTTTTGGTGTAGTGAACTCCATGGCCCCAGAGAACCCCATTCAATCTAAAATGGGTGCCAGGAATTACTCCAATCTCTTTAGGCAAAAGAGCTCCCCTGCTGGATTTCTCAATGATCTTGCAGCATTGAGAGAAGTAGGTAGCTTTAAAGCCAATGATGTTTCAAATGGACAGGCTGCTGCATCAACTAGTGGGTTGAATAGCTCTCTTACTTTCTCATCTAGGCCATCTTCAAGCCTGAAACGGATGCCACAAATTGCTGAAAATGGAAATGGAAGCCTAGAAGAAAATTGTGACCAAAGTGGAAACATAGTTAATGAAAATGGTAACTCAAATTTCTACATACCTAGCTTCACCAATGAATTCTGGGAAAGCTCTTCATTCAATGCCCCAAAAACAGAAAGTGATGATGAAATCATGTTTTCCACTTCCAATGGTTTGGAATCTCAGGAATCAGATTTTAGCTATCAAAATCTTGGTCTGACTCACCATTTGAGCCTACCTAGTACCTCTTCTACTAAGATGTCATCCATAGATAAGTTTCTTCAGATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAGTCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTACATTAAGGACCTGCAGCAACAAGTCAAGGTACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGCACTGAGAAGCATTGCACCAGAACTTGTGCCTGA 1374 0.4148 METESAVERLKLQYVITKMSVMYSPVLKYSEMELQLRKNQEMDSGIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDNNIHGCVNEEAFTSETHQHYIPSTSSEMDTMLSKLLPSNNGWSDSEALQEFGGKPVKQELGESVPQGPPQQNEYSYGGSQLIYQSQQIQGLPNGSSSASGNAFGGSFGVVNSMAPENPIQSKMGARNYSNLFRQKSSPAGFLNDLAALREVGSFKANDVSNGQAAASTSGLNSSLTFSSRPSSSLKRMPQIAENGNGSLEENCDQSGNIVNENGNSNFYIPSFTNEFWESSSFNAPKTESDDEIMFSTSNGLESQESDFSYQNLGLTHHLSLPSTSSTKMSSIDKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQQQVKVLSDCKAKCKCTSTEKHCTRTCA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01834 457 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 444 - -
Spst5g01834 457 Pfam Helix-loop-helix DNA-binding domain 385 430 IPR011598 GO:0046983
Spst5g01834 457 Gene3D - 381 452 IPR036638 GO:0046983
Spst5g01834 457 MobiDBLite consensus disorder prediction 239 266 - -
Spst5g01834 457 FunFam Transcription factor bHLH130 family 380 449 - -
Spst5g01834 457 SMART finulus 385 435 IPR011598 GO:0046983
Spst5g01834 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 382 445 IPR036638 GO:0046983
Spst5g01834 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 429 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01834 Spst-Chr5 54081585 54088351 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g01834 HLH 3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01834 5 54081585 54088351 Spst11g00217 11 7665103 7668428 ECH
Spst5g01834 5 54081585 54088351 Spst5g01834 5 54081585 54088351 ECH